Os04g0463600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0463600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.37 | 0.201 | 11.7 | 0.0532 | 1.1 | 0.317 | -0.62 | 0.298 | -0.193 | 13.6 | 25.28 | 234 | -- | -- |
| 18.38 | 0.2 | 11.7 | -0.0462 | 1.06 | 0.346 | -0.532 | -- | -0.241 | 13.7 | 25.4 | 152 | -- | -- |
| 19.45 | 0.205 | 11.7 | -0.0354 | 1.09 | 0.293 | -- | 0.0135 | -0.21 | 13.8 | 25.25 | 147 | -- | -- |
| 19.43 | 0.205 | 11.7 | -0.042 | 1.09 | 0.302 | -- | -- | -0.215 | 13.8 | 25.23 | 144 | -- | -- |
| 65.29 | 0.376 | 11.7 | -0.212 | -- | 0.768 | -- | 0.294 | -0.287 | -- | 26.6 | 54 | -- | -- |
| 23.86 | 0.229 | 11.7 | 0.0572 | 1.28 | -- | -0.367 | -- | -0.0763 | 14.2 | -- | -- | -- | -- |
| 24.36 | 0.231 | 11.7 | 0.0467 | 1.28 | -- | -- | -- | -0.0783 | 14.2 | -- | -- | -- | -- |
| 63.55 | 0.371 | 11.8 | -0.214 | -- | 0.791 | -- | -- | -0.306 | -- | 26.5 | 34 | -- | -- |
| 19.47 | 0.206 | 11.7 | -- | 1.09 | 0.297 | -- | -- | -0.208 | 13.8 | 25.27 | 141 | -- | -- |
| 121.88 | 0.516 | 11.7 | -0.00695 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 24.42 | 0.231 | 11.7 | -- | 1.28 | -- | -- | -- | -0.0835 | 14.2 | -- | -- | -- | -- |
| 64.35 | 0.375 | 11.8 | -- | -- | 0.74 | -- | -- | -0.308 | -- | 25.85 | 97 | -- | -- |
| 121.89 | 0.515 | 11.7 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 20 | 15.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 28 | 16.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 34 | 16.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 39 | 16.35 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 20 |
| 62 | 16.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 114 | 17.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 249 | 17.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 260 | 17.60 | temperature | 10.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 278 | 17.65 | temperature | 10.0 | 90 | > th | dose dependent | sin | 22 | NA |
| 292 | 17.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 303 | 17.73 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 314 | 17.76 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 12 |
| 327 | 17.79 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 344 | 17.82 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 347 | 17.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 379 | 17.91 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 400 | 17.94 | temperature | 25.0 | 90 | > th | dose independent | rect. | 22 | 21 |
| 414 | 17.97 | temperature | 10.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 434 | 18.01 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 458 | 18.06 | temperature | 10.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 481 | 18.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 483 | 18.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 507 | 18.16 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 11 |
| 510 | 18.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 560 | 18.24 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 571 | 18.24 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 576 | 18.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 578 | 18.26 | radiation | 40.0 | 720 | < th | dose independent | rect. | 21 | 12 |
| 587 | 18.27 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 596 | 18.28 | wind | 9.0 | 720 | < th | dose independent | rect. | 21 | 19 |
| 603 | 18.29 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 16 | 5 |
| 678 | 18.36 | humidity | 60.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 693 | 18.37 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 716 | 18.40 | wind | 9.0 | 720 | < th | dose independent | rect. | 21 | 12 |
| 720 | 18.40 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 738 | 18.42 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 11 |
| 739 | 18.42 | temperature | 10.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 740 | 18.42 | temperature | 10.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 742 | 18.42 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 762 | 18.44 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 3 |
| 804 | 18.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 824 | 18.50 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 841 | 18.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 847 | 18.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 852 | 18.52 | temperature | 30.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 853 | 18.52 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 865 | 18.53 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 905 | 18.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 912 | 18.57 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 928 | 18.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 930 | 18.58 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 9 | 11 |
| 950 | 18.59 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 13 |
| 967 | 18.61 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 12 |
| 971 | 18.61 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 981 | 18.62 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 12 |
| 983 | 18.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 992 | 18.62 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 12 |