Os04g0462300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0462300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.58 | 0.649 | 11.9 | -2.24 | 0.722 | -1.13 | 0.736 | -0.243 | -1.84 | 11.8 | 72 | 1361 | -- | -- |
| 190.66 | 0.643 | 11.9 | -2.28 | 0.731 | -1.14 | 0.723 | -- | -1.85 | 11.8 | 71.54 | 1352 | -- | -- |
| 191.63 | 0.645 | 11.9 | -2.16 | 0.724 | -1.16 | -- | -0.461 | -1.82 | 12.1 | 73.35 | 1359 | -- | -- |
| 192.16 | 0.646 | 11.9 | -2.24 | 0.726 | -1.17 | -- | -- | -1.84 | 12.1 | 73.49 | 1352 | -- | -- |
| 213.33 | 0.68 | 11.9 | -2.18 | -- | -1.25 | -- | -0.524 | -1.81 | -- | 74 | 1517 | -- | -- |
| 239.57 | 0.726 | 11.8 | -2.05 | 0.635 | -- | 0.538 | -- | -1.68 | 11.4 | -- | -- | -- | -- |
| 240.76 | 0.727 | 11.8 | -2.02 | 0.633 | -- | -- | -- | -1.67 | 11.6 | -- | -- | -- | -- |
| 213.91 | 0.681 | 11.9 | -2.25 | -- | -1.27 | -- | -- | -1.83 | -- | 73.87 | 1517 | -- | -- |
| 322.14 | 0.836 | 11.8 | -- | 0.72 | -1.3 | -- | -- | -1.69 | 11.5 | 74 | 3544 | -- | -- |
| 265.94 | 0.762 | 11.8 | -2.04 | -- | -- | -- | -- | -1.68 | -- | -- | -- | -- | -- |
| 348.59 | 0.873 | 11.8 | -- | 0.657 | -- | -- | -- | -1.45 | 11.8 | -- | -- | -- | -- |
| 271.77 | 0.768 | 11.8 | -- | -- | -2.33 | -- | -- | -1.56 | -- | 65 | 30433 | -- | -- |
| 375.76 | 0.905 | 11.8 | -- | -- | -- | -- | -- | -1.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 176.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 4 | 177.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 33 | 181.40 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 53 | 182.69 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 59 | 182.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 62 | 182.95 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 151 | 187.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 156 | 187.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 157 | 187.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 203 | 188.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 217 | 188.29 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 234 | 188.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 244 | 188.56 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 245 | 188.58 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 287 | 189.18 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 369 | 190.26 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 443 | 190.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 525 | 191.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 557 | 191.52 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 560 | 191.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 721 | 192.31 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 783 | 192.68 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 809 | 192.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 830 | 192.74 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 838 | 192.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 913 | 193.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 962 | 193.26 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 5 |