Os04g0461100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0461100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.91 | 0.311 | 13.8 | 0.434 | 1.33 | 0.898 | -0.462 | -0.521 | -0.397 | 20.2 | 21.03 | 114 | -- | -- |
| 44.08 | 0.309 | 13.8 | 0.418 | 1.33 | 1.07 | -0.471 | -- | -0.4 | 20.2 | 20.9 | 120 | -- | -- |
| 44.56 | 0.311 | 13.8 | 0.449 | 1.33 | 0.901 | -- | -0.558 | -0.397 | 20.2 | 21 | 116 | -- | -- |
| 44.74 | 0.312 | 13.8 | 0.435 | 1.33 | 1.09 | -- | -- | -0.4 | 20.2 | 20.83 | 131 | -- | -- |
| 138.27 | 0.551 | 13.8 | 0.489 | -- | 1.01 | -- | -0.535 | -0.36 | -- | 22.64 | 14 | -- | -- |
| 52.48 | 0.34 | 13.9 | 0.223 | 1.34 | -- | -0.541 | -- | -0.483 | 20.4 | -- | -- | -- | -- |
| 53.41 | 0.342 | 13.9 | 0.24 | 1.34 | -- | -- | -- | -0.483 | 20.4 | -- | -- | -- | -- |
| 138.5 | 0.551 | 13.8 | 0.437 | -- | 1.11 | -- | -- | -0.37 | -- | 22.5 | 10 | -- | -- |
| 49.2 | 0.327 | 13.8 | -- | 1.34 | 0.819 | -- | -- | -0.466 | 20.3 | 20.96 | 114 | -- | -- |
| 153.87 | 0.58 | 13.8 | 0.233 | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
| 54.93 | 0.347 | 13.9 | -- | 1.34 | -- | -- | -- | -0.51 | 20.4 | -- | -- | -- | -- |
| 143.2 | 0.559 | 13.8 | -- | -- | 0.951 | -- | -- | -0.434 | -- | 22.5 | 10 | -- | -- |
| 155.3 | 0.582 | 13.8 | -- | -- | -- | -- | -- | -0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 14 |
| 3 | 42.17 | temperature | 20.0 | 90 | < th | dose independent | sin | 5 | NA |
| 4 | 42.19 | temperature | 20.0 | 90 | > th | dose independent | sin | 5 | NA |
| 13 | 42.80 | temperature | 20.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 17 | 43.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 16 |
| 22 | 43.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 43.07 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 22 |
| 27 | 43.13 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 12 |
| 48 | 43.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 54 | 43.43 | temperature | 20.0 | 10 | < th | dose independent | rect. | 24 | 13 |
| 82 | 43.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 92 | 43.74 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 13 |
| 110 | 43.82 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 127 | 43.86 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 148 | 43.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 167 | 43.98 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 168 | 43.98 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 174 | 44.00 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 189 | 44.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 190 | 44.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 201 | 44.08 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 214 | 44.13 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 230 | 44.18 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 253 | 44.23 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 22 |
| 257 | 44.24 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 11 |
| 258 | 44.24 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 16 |
| 263 | 44.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 282 | 44.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 357 | 44.44 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 364 | 44.45 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 369 | 44.45 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 371 | 44.45 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 387 | 44.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 21 |
| 400 | 44.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 421 | 44.55 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 434 | 44.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 436 | 44.58 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 446 | 44.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 465 | 44.62 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 491 | 44.65 | humidity | 90.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 523 | 44.69 | temperature | 20.0 | 90 | > th | dose independent | no | NA | NA |
| 525 | 44.69 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 531 | 44.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 549 | 44.72 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 566 | 44.73 | temperature | 20.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 608 | 44.78 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 636 | 44.80 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 660 | 44.83 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 680 | 44.85 | humidity | 90.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 687 | 44.86 | wind | 5.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 695 | 44.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 710 | 44.87 | temperature | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 763 | 44.92 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 772 | 44.92 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 773 | 44.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 778 | 44.93 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 788 | 44.94 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 796 | 44.95 | wind | 5.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 805 | 44.96 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 817 | 44.97 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 856 | 45.00 | wind | 5.0 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 865 | 45.00 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 18 |
| 868 | 45.01 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 877 | 45.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 884 | 45.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 892 | 45.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 898 | 45.03 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 900 | 45.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 912 | 45.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 924 | 45.05 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 932 | 45.05 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 954 | 45.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 957 | 45.07 | wind | 5.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 965 | 45.07 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 993 | 45.09 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |