BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0461100 Os04g0461100|AK068022
         (183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68590.1  | chr1:25757593-25758169 REVERSE LENGTH=167          153   5e-38
AT5G15760.1  | chr5:5143100-5143905 FORWARD LENGTH=184            136   5e-33

>AT1G68590.1 | chr1:25757593-25758169 REVERSE LENGTH=167
          Length = 166

 Score =  153 bits (386), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 77  VGGGDASAGEEAQEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFW 136
           V G D S     Q  KV  P+ +   +VLKF+WMEKNIG+ LDQ VPG+G+IPLSPY+FW
Sbjct: 60  VTGIDTSDNTPQQTIKVVKPDEKS-RVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFW 118

Query: 137 PRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 183
           PRKDAWEEL++ LE K WISQK+MIILLNQATDIINLWQQ GG+L++
Sbjct: 119 PRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165



>AT5G15760.1 | chr5:5143100-5143905 FORWARD LENGTH=184
          Length = 183

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 75/94 (79%)

Query: 89  QEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAK 148
           ++ +V V   + P +VLKF+WM+K+IG+ALD ++PG+G+IPLSPYYFWPRKDAWEEL+  
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTL 149

Query: 149 LEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 182
           LE K WIS+   + LLNQATDIINLWQ  GG LS
Sbjct: 150 LESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,058,341
Number of extensions: 106210
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)