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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0460500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Molybdenum cofactor synthesis/low xanthine dehydrogenase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0411) R2 : 0.00186
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0798 (0.0865) R2dN8 : 0.0024 R2N8 : 0.00186
σ : 0.774
deviance : 274.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.73 0.753 3.2 0.177 0.0159 -0.759 -0.592 -2.54 -0.193 18.7 53 4129 -- --
263.67 0.756 3.2 -0.0257 0.0289 -0.881 0.638 -- -0.243 5.13 26.7 4050 -- --
257.45 0.747 3.2 0.189 0.0575 -0.761 -- -2.54 -0.185 23.3 54 4151 -- --
264.34 0.757 3.2 -0.0154 0.0482 -0.881 -- -- -0.249 1.73 43.2 4059 -- --
257.62 0.748 3.2 0.189 -- -0.766 -- -2.53 -0.199 -- 54 4133 -- --
273.57 0.775 3.16 -0.0586 0.0367 -- 0.605 -- -0.0843 4.84 -- -- -- --
274 0.775 3.16 -0.0625 0.098 -- -- -- -0.0878 0.243 -- -- -- --
264.44 0.757 3.2 -0.0228 -- -0.893 -- -- -0.255 -- 44 4050 -- --
264.34 0.757 3.2 -- 0.0443 -0.885 -- -- -0.255 0.794 44 4068 -- --
274.6 0.774 3.16 -0.0593 -- -- -- -- -0.0863 -- -- -- -- --
274.1 0.774 3.16 -- 0.0971 -- -- -- -0.0809 0.209 -- -- -- --
264.45 0.757 3.2 -- -- -0.899 -- -- -0.255 -- 44 4050 -- --
274.7 0.774 3.16 -- -- -- -- -- -0.0798 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.89 atmosphere 1005.0 30 < th dose independent rect. 12 4
9 249.44 wind 3.0 10 < th dose dependent rect. 22 1
11 250.73 precipitation 0.1 10 < th dose independent rect. 22 1
12 250.73 precipitation 0.1 10 < th dose dependent rect. 22 1
14 251.06 temperature 30.0 10 < th dose dependent rect. 22 1
16 251.24 atmosphere 995.0 30 > th dose dependent rect. 23 22
17 251.56 atmosphere 1005.0 10 > th dose independent rect. 22 1
18 251.65 atmosphere 1010.0 270 < th dose dependent rect. 12 2
19 251.69 wind 3.0 10 < th dose independent rect. 22 1
21 251.78 wind 9.0 10 < th dose independent rect. 23 23
23 251.88 wind 7.0 10 < th dose independent rect. 22 1
25 251.88 temperature 10.0 10 > th dose independent rect. 22 1
27 251.88 temperature 30.0 10 < th dose independent rect. 22 1
28 251.88 humidity 50.0 10 > th dose independent rect. 22 1
31 251.88 atmosphere 995.0 10 > th dose independent rect. 22 1
32 251.88 atmosphere 1010.0 10 < th dose independent rect. 22 1
34 251.88 radiation 1.0 10 < th dose independent rect. 22 1
39 251.88 temperature 10.0 10 > th dose independent rect. 23 23
40 251.88 radiation 1.0 10 < th dose dependent rect. 22 1
48 252.15 atmosphere 995.0 10 > th dose dependent rect. 22 1
49 252.23 atmosphere 1005.0 10 > th dose dependent rect. 22 1
52 252.48 atmosphere 1010.0 270 < th dose dependent rect. 11 4
53 252.50 wind 1.0 10 > th dose independent rect. 22 1
57 252.72 humidity 50.0 10 > th dose dependent rect. 22 1
63 252.95 temperature 10.0 10 > th dose dependent rect. 22 1
69 253.12 atmosphere 1010.0 10 < th dose dependent rect. 13 4
70 253.18 atmosphere 1015.0 10 < th dose dependent rect. 22 1
72 253.21 humidity 90.0 10 < th dose dependent rect. 22 1
94 254.43 humidity 60.0 4320 > th dose dependent rect. 11 1
95 254.45 humidity 90.0 90 < th dose independent rect. 21 1
98 254.53 humidity 70.0 4320 > th dose independent rect. 10 1
100 254.62 radiation 1.0 90 < th dose independent rect. 14 1
101 254.62 radiation 1.0 90 < th dose dependent rect. 14 1
103 254.71 atmosphere 1005.0 30 > th dose independent rect. 23 22
105 254.86 humidity 70.0 4320 < th dose independent rect. 10 1
106 254.87 atmosphere 1005.0 10 < th dose independent rect. 12 15
114 254.93 humidity 70.0 4320 > th dose independent rect. 9 3
119 255.02 atmosphere 995.0 30 > th dose dependent rect. 23 14
120 255.03 humidity 80.0 4320 < th dose independent rect. 7 6
149 255.24 humidity 80.0 4320 > th dose independent rect. 7 6
151 255.25 humidity 80.0 14400 < th dose dependent rect. 4 5
153 255.27 humidity 90.0 10 < th dose independent rect. 22 1
166 255.37 humidity 70.0 4320 < th dose independent rect. 9 3
168 255.39 atmosphere 1010.0 10 < th dose dependent rect. 13 14
171 255.41 humidity 70.0 4320 > th dose independent rect. 19 18
173 255.41 atmosphere 1005.0 10 < th dose dependent rect. 13 22
174 255.42 wind 1.0 4320 < th dose dependent rect. 6 1
178 255.47 humidity 70.0 14400 > th dose independent rect. 24 10
180 255.48 humidity 70.0 14400 > th dose independent rect. 5 5
181 255.48 humidity 70.0 14400 > th dose independent rect. 2 8
199 255.59 atmosphere 1005.0 10 < th dose dependent rect. 13 10
207 255.64 atmosphere 1015.0 30 < th dose dependent rect. 1 15
213 255.66 atmosphere 1015.0 90 < th dose dependent rect. 21 20
216 255.68 humidity 70.0 4320 > th dose independent rect. 19 20
244 255.94 humidity 70.0 4320 > th dose independent rect. 1 12
277 256.02 humidity 60.0 4320 > th dose dependent rect. 23 14
282 256.05 humidity 60.0 4320 > th dose dependent rect. 1 12
283 256.06 atmosphere 1000.0 30 > th dose independent rect. 23 14
286 256.06 humidity 60.0 4320 > th dose dependent rect. 20 17
306 256.12 humidity 70.0 4320 > th dose independent sin 5 NA
316 256.18 wind 1.0 10 > th dose dependent rect. 22 1
328 256.21 humidity 80.0 14400 < th dose dependent rect. 24 10
371 256.34 humidity 70.0 4320 < th dose independent rect. 19 18
381 256.37 humidity 70.0 4320 > th dose dependent rect. 6 7
399 256.46 humidity 70.0 4320 < th dose independent rect. 19 20
416 256.52 atmosphere 1005.0 30 < th dose independent rect. 1 15
423 256.53 atmosphere 1015.0 270 < th dose dependent rect. 19 21
424 256.54 humidity 90.0 4320 < th dose dependent rect. 20 17
455 256.63 atmosphere 1000.0 270 > th dose independent rect. 2 10
473 256.65 atmosphere 995.0 1440 > th dose independent rect. 18 8
517 256.75 humidity 70.0 4320 < th dose independent sin 5 NA
519 256.75 humidity 70.0 4320 > th dose dependent rect. 6 3
529 256.78 atmosphere 1005.0 30 > th dose independent rect. 4 17
548 256.83 humidity 60.0 4320 > th dose dependent sin 5 NA
576 256.89 humidity 70.0 4320 > th dose independent rect. 14 22
617 256.93 atmosphere 1000.0 720 < th dose dependent rect. 20 13
635 256.98 precipitation 0.1 4320 < th dose independent rect. 23 1
638 256.98 precipitation 0.1 4320 < th dose dependent rect. 23 1
651 257.01 atmosphere 1000.0 720 < th dose dependent sin 9 NA
659 257.03 humidity 80.0 4320 < th dose dependent rect. 20 1
671 257.04 humidity 90.0 4320 < th dose dependent rect. 11 2
699 257.09 humidity 70.0 4320 > th dose independent rect. 8 12
707 257.10 humidity 70.0 4320 > th dose independent rect. 8 17
751 257.13 atmosphere 1000.0 1440 < th dose dependent rect. 4 1
775 257.17 radiation 20.0 4320 < th dose dependent rect. 23 1
827 257.23 humidity 70.0 4320 > th dose independent no NA NA
901 257.26 atmosphere 1000.0 720 < th dose dependent rect. 23 8
945 257.32 humidity 70.0 4320 < th dose independent rect. 14 22
949 257.32 humidity 90.0 4320 < th dose dependent rect. 15 22
986 257.38 atmosphere 995.0 10 > th dose dependent rect. 4 17