BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0460500 Os04g0460500|Os04g0460500
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01290.1  | chr1:114299-115296 FORWARD LENGTH=271              223   9e-59

>AT1G01290.1 | chr1:114299-115296 FORWARD LENGTH=271
          Length = 270

 Score =  223 bits (568), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 121/219 (55%), Positives = 148/219 (67%), Gaps = 35/219 (15%)

Query: 29  IAELNKEMESVFGESPSP--------SPLGSTPQQPARPTN---------------GSGD 65
           I ELN+EM+S+FG+ PSP        S L S+  +P R  N                  D
Sbjct: 40  INELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKND 99

Query: 66  GQPM------------LTHTDSSGQAKMVDVSSKHDSTRVAIATCRVLLGQEAFDLVASN 113
            Q +            LTH   +G+A+MVDVSSK +S R A+A C+V+LG+  FDLV +N
Sbjct: 100 SQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLAN 159

Query: 114 KIAKGDVLTVAKIAGITGAKQTSNLIPLCHNLNLSHVRVDLTLNEEDSSVMIEGEASTSG 173
           ++ KGDVL VAKIAGI GAKQTS+LIPLCHN+ L+HVRVDL LN ED SV IEGEAS +G
Sbjct: 160 QMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTG 219

Query: 174 KTGVEMEAMTAVAIAGLTVYDMCKAASKNICITDICLQH 212
           KTGVEMEAMTAV++AGLTVYDMCKAASK+I ITD+ L+ 
Sbjct: 220 KTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLER 258



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,377,474
Number of extensions: 212107
Number of successful extensions: 555
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)