Os04g0458400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0458400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.93 | 0.301 | 9.7 | -0.309 | 0.242 | 1.17 | 0.0291 | 0.657 | -0.373 | 8.27 | 20.75 | 20 | -- | -- |
| 41.32 | 0.299 | 9.72 | -0.418 | 0.236 | 1.2 | 0.139 | -- | -0.402 | 8.29 | 20.97 | 19 | -- | -- |
| 40.94 | 0.298 | 9.7 | -0.308 | 0.242 | 1.17 | -- | 0.66 | -0.373 | 8.27 | 20.76 | 19 | -- | -- |
| 41.33 | 0.299 | 9.72 | -0.419 | 0.245 | 1.21 | -- | -- | -0.405 | 8.11 | 21.13 | 19 | -- | -- |
| 43.91 | 0.309 | 9.71 | -0.303 | -- | 1.16 | -- | 0.753 | -0.368 | -- | 20.25 | 10 | -- | -- |
| 62.67 | 0.371 | 9.67 | -0.183 | 0.493 | -- | 0.479 | -- | -0.202 | 12.7 | -- | -- | -- | -- |
| 63.64 | 0.374 | 9.67 | -0.165 | 0.491 | -- | -- | -- | -0.2 | 12.6 | -- | -- | -- | -- |
| 44.32 | 0.31 | 9.72 | -0.416 | -- | 1.21 | -- | -- | -0.404 | -- | 20.65 | 9 | -- | -- |
| 45.73 | 0.315 | 9.71 | -- | 0.267 | 1.12 | -- | -- | -0.351 | 8.25 | 21.76 | 23 | -- | -- |
| 78.77 | 0.415 | 9.68 | -0.183 | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
| 64.36 | 0.375 | 9.67 | -- | 0.494 | -- | -- | -- | -0.181 | 12.6 | -- | -- | -- | -- |
| 48.69 | 0.325 | 9.71 | -- | -- | 1.12 | -- | -- | -0.344 | -- | 20.88 | 9 | -- | -- |
| 79.64 | 0.417 | 9.68 | -- | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 4 | 40.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 7 | 40.97 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 10 | 41.07 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 17 | 41.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 19 | 41.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 20 | 41.36 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 21 | 41.37 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 39 | 41.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 43 | 41.71 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 56 | 41.82 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 98 | 42.15 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 113 | 42.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 126 | 42.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 132 | 42.29 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 137 | 42.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 145 | 42.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 149 | 42.39 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 179 | 42.55 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 202 | 42.65 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 309 | 43.16 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 317 | 43.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 334 | 43.24 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 362 | 43.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 369 | 43.42 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 370 | 43.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 377 | 43.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 384 | 43.46 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 411 | 43.54 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 412 | 43.54 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 422 | 43.58 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 444 | 43.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 474 | 43.75 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 492 | 43.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 498 | 43.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 516 | 43.86 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 527 | 43.89 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 539 | 43.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 554 | 43.94 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 555 | 43.95 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 559 | 43.96 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 568 | 43.97 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 575 | 43.98 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 578 | 43.99 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 609 | 44.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 620 | 44.07 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 625 | 44.09 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 663 | 44.15 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 667 | 44.15 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 736 | 44.27 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 743 | 44.28 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 759 | 44.31 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 803 | 44.36 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 889 | 44.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 902 | 44.47 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 903 | 44.47 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 908 | 44.48 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 920 | 44.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 921 | 44.50 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 945 | 44.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 962 | 44.54 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 970 | 44.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 971 | 44.55 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 986 | 44.55 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 987 | 44.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |