Os04g0458300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Non-cell-autonomous protein pathway2.
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Os04g0458300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Non-cell-autonomous protein pathway2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.23 | 0.697 | 11.3 | 1.24 | 4.17 | 1.51 | -0.361 | 2.34 | 0.46 | 23.4 | 70.14 | 1452 | 18.2 | 17.8 |
| 226.61 | 0.701 | 11.3 | 1.64 | 4.06 | 1.87 | -0.32 | -- | 0.464 | 23.3 | 71 | 1478 | 18.3 | 16.9 |
| 220.78 | 0.692 | 11.3 | 1.26 | 4.17 | 1.52 | -- | 2.31 | 0.461 | 23.4 | 70.14 | 1450 | 18.2 | 17.8 |
| 226.58 | 0.701 | 11.3 | 1.62 | 4 | 1.9 | -- | -- | 0.467 | 23.2 | 70.91 | 1486 | 18.3 | 16.9 |
| 942.82 | 1.44 | 11.2 | 1.18 | -- | 1.99 | -- | -0.423 | 0.466 | -- | 74.77 | 27 | 18.6 | 19.1 |
| 327.03 | 0.848 | 11.2 | 0.934 | 4.1 | -- | -0.548 | -- | 0.479 | 23.4 | -- | -- | -- | -- |
| 328.32 | 0.849 | 11.2 | 0.957 | 4.1 | -- | -- | -- | 0.482 | 23.4 | -- | -- | -- | -- |
| 455.3 | 0.994 | 11.3 | 0.0816 | -- | 4.5 | -- | -- | -0.187 | -- | 64 | 1718 | 15.7 | 11.6 |
| 288.29 | 0.791 | 11.2 | -- | 3.91 | 1.6 | -- | -- | 0.509 | 23.1 | 73.06 | 3019 | 17.7 | 17.1 |
| 1381.69 | 1.74 | 11.1 | 1.06 | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
| 352.45 | 0.878 | 11.3 | -- | 4.11 | -- | -- | -- | 0.375 | 23.4 | -- | -- | -- | -- |
| 427.67 | 0.963 | 11.3 | -- | -- | 5.26 | -- | -- | -0.142 | -- | 62.83 | 1760 | 15.7 | 11.3 |
| 1411.5 | 1.75 | 11.2 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.94 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 2 | 222.28 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 5 | 224.21 | humidity | 70.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 11 | 225.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 16 | 226.70 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 17 | 226.95 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 18 | 227.07 | humidity | 70.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 19 | 227.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 20 | 227.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 21 | 227.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 22 | 227.29 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 31 | 227.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 32 | 227.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 37 | 227.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 39 | 227.94 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 50 | 228.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 51 | 228.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 52 | 228.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 69 | 228.40 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 72 | 228.49 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 73 | 228.49 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 77 | 228.54 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 81 | 228.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 91 | 228.73 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 92 | 228.73 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 96 | 228.75 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 110 | 228.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 111 | 228.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 134 | 229.30 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 137 | 229.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 186 | 230.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 205 | 230.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 207 | 230.39 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 210 | 230.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 211 | 230.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 215 | 230.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 231 | 230.66 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 232 | 230.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 280 | 231.06 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 8 | NA |
| 288 | 231.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 329 | 231.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 11 |
| 359 | 231.70 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 389 | 231.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 505 | 232.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 541 | 233.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 553 | 233.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 616 | 233.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 16 |
| 620 | 233.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 16 |
| 646 | 234.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 651 | 234.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 16 |
| 679 | 234.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 704 | 234.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 706 | 234.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 718 | 234.51 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 721 | 234.52 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 771 | 234.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 782 | 234.87 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 880 | 235.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 898 | 235.50 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 912 | 235.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 925 | 235.64 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 928 | 235.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 943 | 235.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 976 | 235.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |