Os04g0445800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core family protein.
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Os04g0445800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.77 | 0.161 | 12 | -0.149 | 0.0439 | -0.283 | 0.342 | 0.393 | 0.173 | 5.77 | 37.47 | 1044 | -- | -- |
| 11.98 | 0.161 | 12 | -0.179 | 0.0423 | -0.289 | 0.284 | -- | 0.171 | 5.29 | 37.69 | 1030 | -- | -- |
| 12.04 | 0.162 | 12.1 | -0.154 | 0.0455 | -0.275 | -- | 0.289 | 0.169 | 6.09 | 36.61 | 1044 | -- | -- |
| 12.14 | 0.162 | 12.1 | -0.177 | 0.0299 | -0.285 | -- | -- | 0.166 | 6.18 | 36.42 | 1013 | -- | -- |
| 12.07 | 0.162 | 12.1 | -0.157 | -- | -0.305 | -- | 0.277 | 0.171 | -- | 36.26 | 1006 | -- | -- |
| 13.92 | 0.175 | 12.1 | -0.196 | 0.125 | -- | 0.217 | -- | 0.131 | 7.29 | -- | -- | -- | -- |
| 14.03 | 0.175 | 12.1 | -0.191 | 0.125 | -- | -- | -- | 0.131 | 7.81 | -- | -- | -- | -- |
| 12.16 | 0.162 | 12.1 | -0.181 | -- | -0.294 | -- | -- | 0.167 | -- | 34.79 | 975 | -- | -- |
| 12.96 | 0.168 | 12 | -- | 0.0275 | -0.286 | -- | -- | 0.192 | 6.45 | 34.3 | 1013 | -- | -- |
| 14.88 | 0.18 | 12.1 | -0.189 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 14.98 | 0.181 | 12.1 | -- | 0.124 | -- | -- | -- | 0.152 | 7.91 | -- | -- | -- | -- |
| 12.93 | 0.167 | 12 | -- | -- | -0.28 | -- | -- | 0.187 | -- | 27.74 | 977 | -- | -- |
| 15.82 | 0.186 | 12.1 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.51 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 3 | 11.61 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 9 |
| 9 | 11.68 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 10 | 11.69 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 11 | 11.70 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 12 | 11.71 | radiation | 30 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 13 | 11.71 | radiation | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 16 | 11.77 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 18 | 11.79 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 19 | 11.80 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 10 |
| 26 | 11.83 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 28 | 11.83 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 29 | 11.84 | radiation | 30 | 10 | < th | dose independent | rect. | 6 | 16 |
| 34 | 11.86 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 40 | 11.88 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 13 |
| 42 | 11.88 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 62 | 11.91 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 4 |
| 64 | 11.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 84 | 11.92 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 109 | 11.94 | radiation | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 125 | 11.94 | radiation | 40 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 250 | 12.01 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 251 | 12.01 | radiation | 40 | 1440 | > th | dose dependent | sin | 11 | NA |
| 270 | 12.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 273 | 12.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 290 | 12.03 | radiation | 40 | 1440 | < th | dose independent | sin | 7 | NA |
| 291 | 12.03 | radiation | 40 | 1440 | < th | dose independent | sin | 5 | NA |
| 293 | 12.03 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 299 | 12.03 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 22 |
| 320 | 12.05 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 375 | 12.06 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 400 | 12.06 | radiation | 1 | 1440 | > th | dose dependent | sin | 7 | NA |
| 401 | 12.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 407 | 12.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 428 | 12.07 | radiation | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 468 | 12.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 544 | 12.11 | radiation | 30 | 10 | < th | dose independent | rect. | 6 | 14 |
| 579 | 12.12 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 625 | 12.12 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 629 | 12.13 | radiation | 40 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 645 | 12.13 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 658 | 12.14 | radiation | 10 | 270 | < th | dose independent | sin | 2 | NA |
| 660 | 12.14 | radiation | 40 | 1440 | < th | dose independent | no | NA | NA |
| 663 | 12.14 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 9 |
| 723 | 12.14 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 742 | 12.14 | radiation | 40 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 787 | 12.14 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 850 | 12.15 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 880 | 12.16 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 23 |
| 882 | 12.16 | radiation | 40 | 1440 | < th | dose dependent | sin | 7 | NA |
| 914 | 12.17 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 19 |
| 995 | 12.18 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 23 |