BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0445800 Os04g0445800|AK099454
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14080.1  | chr3:4667717-4668989 FORWARD LENGTH=129            191   9e-50
AT1G19120.1  | chr1:6608288-6609162 FORWARD LENGTH=129            179   4e-46

>AT3G14080.1 | chr3:4667717-4668989 FORWARD LENGTH=129
          Length = 128

 Score =  191 bits (485), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 104/127 (81%)

Query: 3   SWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELY 62
           SWAGP+EI+LSTSLA +LD+KL+VLLRDGRKL+GTL SFDQFAN VL+GACERVIVGE Y
Sbjct: 2   SWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQY 61

Query: 63  CDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSXXXXXXXXXXXXXXXDLKGSMRKR 122
           CD+PLGLYVIRGENVVLIGELD E++ELP HM  VS               +L+G+MRKR
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKR 121

Query: 123 MEFLDFD 129
           MEFLDFD
Sbjct: 122 MEFLDFD 128



>AT1G19120.1 | chr1:6608288-6609162 FORWARD LENGTH=129
          Length = 128

 Score =  179 bits (453), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 98/127 (77%)

Query: 3   SWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELY 62
           SWA PD+IF STSLA +LDKKL+VLLRDGRKL+G L SFDQFAN VL+ A ERVIVG+LY
Sbjct: 2   SWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLY 61

Query: 63  CDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSXXXXXXXXXXXXXXXDLKGSMRKR 122
           CD+PLGLY+IRGENVVLIGELD EK+ELPAHM  V                 LKG+MRKR
Sbjct: 62  CDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKR 121

Query: 123 MEFLDFD 129
           MEFLD D
Sbjct: 122 MEFLDLD 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,500,814
Number of extensions: 88208
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)