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Os04g0445400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.15 (0.0308) R2 : 0.432
β1 : -1.67 (0.113) R2dD : 0.282 R2D : 0.296
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.26 (0.124) R2dE : 0.131 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0798 (0.066) R2dN8 : 0.00245 R2N8 : -0.00493
σ : 0.577
deviance : 153.25
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 205.9
memory length : 1278
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.05 0.542 8.15 -1.57 0.55 -1.41 -1.44 1.21 -0.0461 19.4 160.3 1180 -- --
134.85 0.541 8.16 -1.68 0.558 -1.31 -1.32 -- -0.0697 19.2 178.8 1176 -- --
138.2 0.548 8.15 -1.56 0.527 -1.33 -- 1.01 -0.0503 18.7 150.9 1220 -- --
139.42 0.55 8.16 -1.65 0.558 -1.3 -- -- -0.0719 18.9 195.2 1176 -- --
151.35 0.573 8.14 -1.54 -- -1.34 -- 1.16 -0.055 -- 142.1 1289 -- --
166.76 0.605 8.17 -1.74 0.606 -- -1.07 -- -0.112 17.7 -- -- -- --
168.91 0.609 8.17 -1.73 0.607 -- -- -- -0.115 17 -- -- -- --
153.25 0.577 8.15 -1.67 -- -1.26 -- -- -0.0798 -- 205.9 1278 -- --
211.04 0.677 8.12 -- 0.596 -1.46 -- -- 0.116 19.1 204.3 1159 -- --
188.25 0.641 8.16 -1.75 -- -- -- -- -0.131 -- -- -- -- --
247.93 0.737 8.12 -- 0.638 -- -- -- 0.0774 16.9 -- -- -- --
226.23 0.701 8.1 -- -- -1.4 -- -- 0.11 -- 216.6 1278 -- --
269.35 0.766 8.11 -- -- -- -- -- 0.0636 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.38 humidity 80 1440 < th dose independent rect. 6 9
6 132.77 humidity 80 1440 < th dose independent rect. 2 13
15 133.01 humidity 80 1440 < th dose independent sin 2 NA
16 133.04 humidity 80 1440 > th dose independent rect. 2 15
20 133.14 humidity 80 14400 < th dose dependent rect. 6 1
30 133.54 humidity 80 1440 > th dose independent rect. 6 10
35 133.66 humidity 80 1440 > th dose independent sin 1 NA
74 134.38 humidity 90 720 < th dose dependent rect. 17 15
88 134.88 humidity 80 1440 < th dose independent rect. 2 19
90 135.00 humidity 80 1440 < th dose independent rect. 5 16
91 135.00 humidity 80 1440 > th dose independent rect. 2 19
101 135.09 humidity 80 1440 < th dose independent rect. 21 20
131 135.39 humidity 80 1440 > th dose independent rect. 21 20
137 135.51 humidity 80 1440 > th dose independent rect. 5 16
207 136.21 humidity 80 14400 < th dose independent rect. 6 1
208 136.23 humidity 90 1440 < th dose dependent rect. 1 16
214 136.37 humidity 80 1440 > th dose independent rect. 9 6
216 136.38 wind 3 14400 < th dose independent rect. 2 3
218 136.39 humidity 80 1440 > th dose independent rect. 11 2
220 136.39 humidity 90 1440 < th dose dependent rect. 21 20
236 136.49 humidity 80 1440 < th dose independent rect. 11 2
243 136.53 humidity 90 1440 < th dose dependent rect. 11 6
253 136.58 humidity 90 1440 < th dose dependent rect. 11 21
256 136.62 humidity 80 14400 > th dose independent rect. 5 2
270 136.69 humidity 90 1440 < th dose dependent rect. 9 23
283 136.78 humidity 90 1440 < th dose dependent rect. 1 21
299 136.87 humidity 80 1440 > th dose independent rect. 10 4
330 136.97 humidity 90 1440 < th dose dependent sin 23 NA
345 137.02 humidity 80 1440 < th dose independent rect. 6 21
355 137.06 humidity 90 720 < th dose dependent sin 12 NA
356 137.06 humidity 90 1440 < th dose dependent no NA NA
373 137.11 humidity 90 1440 < th dose dependent rect. 5 23
376 137.12 humidity 90 1440 < th dose dependent rect. 7 23
378 137.14 humidity 50 720 > th dose dependent rect. 16 17
392 137.17 wind 3 14400 > th dose independent rect. 2 4
401 137.20 humidity 80 1440 < th dose independent rect. 16 23
411 137.23 wind 3 14400 < th dose independent rect. 4 1
436 137.29 humidity 50 1440 > th dose dependent rect. 12 5
439 137.30 humidity 80 1440 < th dose independent no NA NA
467 137.39 humidity 80 1440 > th dose independent rect. 6 21
472 137.40 wind 1 43200 < th dose dependent rect. 9 4
479 137.43 humidity 50 1440 > th dose dependent rect. 2 21
486 137.45 radiation 10 1440 < th dose dependent rect. 11 19
488 137.45 humidity 50 1440 > th dose dependent rect. 9 21
517 137.53 humidity 90 1440 < th dose dependent rect. 15 23
522 137.55 humidity 50 1440 > th dose dependent sin 21 NA
526 137.56 humidity 70 1440 > th dose dependent rect. 11 2
528 137.56 humidity 90 1440 < th dose dependent rect. 9 15
532 137.57 humidity 50 1440 > th dose dependent rect. 9 15
537 137.58 humidity 80 1440 > th dose independent no NA NA
543 137.59 humidity 50 1440 > th dose dependent rect. 2 16
552 137.60 humidity 50 1440 > th dose dependent rect. 9 23
565 137.65 humidity 50 1440 > th dose dependent rect. 11 13
571 137.66 humidity 90 1440 < th dose dependent rect. 15 2
573 137.66 humidity 90 1440 < th dose dependent rect. 11 13
576 137.67 humidity 50 1440 > th dose dependent rect. 7 23
579 137.68 humidity 90 1440 < th dose dependent rect. 11 11
611 137.72 humidity 50 1440 > th dose dependent rect. 20 22
616 137.73 humidity 50 1440 > th dose dependent rect. 7 17
676 137.84 humidity 50 1440 > th dose dependent rect. 9 8
701 137.88 humidity 80 1440 > th dose independent rect. 11 23
709 137.89 wind 3 14400 < th dose independent rect. 20 10
712 137.89 humidity 80 1440 > th dose independent rect. 15 23
721 137.90 humidity 80 1440 < th dose independent rect. 12 23
767 137.96 humidity 50 1440 > th dose dependent no NA NA
891 138.16 humidity 50 1440 > th dose dependent rect. 7 10
914 138.18 wind 3 14400 < th dose dependent rect. 3 3
959 138.23 radiation 10 1440 < th dose dependent rect. 11 14
968 138.25 humidity 90 720 > th dose dependent rect. 20 3
974 138.26 humidity 50 1440 > th dose dependent rect. 15 2
986 138.29 radiation 10 1440 < th dose dependent rect. 11 10
997 138.30 radiation 10 1440 < th dose dependent rect. 11 8
999 138.30 radiation 10 1440 < th dose dependent rect. 11 12