BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0445400 Os04g0445400|AK108515
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08880.1  | chr3:2703169-2704165 FORWARD LENGTH=202            106   9e-24
AT5G01570.1  | chr5:221367-222798 FORWARD LENGTH=202               54   4e-08

>AT3G08880.1 | chr3:2703169-2704165 FORWARD LENGTH=202
          Length = 201

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 113/195 (57%), Gaps = 1/195 (0%)

Query: 5   AGMRVNVASLLALGDDTVELLGERKDGEALAQACAGARMLRSACRSESDDLEVQMKEYQX 64
           A    ++  L++ GDD + LL  +   + ++Q+    + L  AC  + + ++  +++ + 
Sbjct: 4   ASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIEDCKT 63

Query: 65  XXXXXXXXXXXXXXXXXADDELNALQKEMEEKLQDEQRLRQDLRAVRDELDNLDSQRDSI 124
                            A+DE+  LQKE++E+++ E +L+ +LR V DEL +L++Q  SI
Sbjct: 64  KLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQLSSI 123

Query: 125 EQRKEALRKMEKEMMKAQNMLSMCVSVTKIMPNFEDKDKISGYIVDKNMKKLERFEFDKT 184
           ++ K++ ++  ++ ++A+  LSM  SVT ++P+ +D  KISGY+VD+  + +E+F+F+  
Sbjct: 124 DEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQFETN 183

Query: 185 T-PPVDICNNLWKMV 198
                + CN++W ++
Sbjct: 184 KMTAYETCNSIWSII 198



>AT5G01570.1 | chr5:221367-222798 FORWARD LENGTH=202
          Length = 201

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 124 IEQRKEALRKMEKEMMKAQNMLSMCVSVTKIMPNFEDKDKISGYIVDKNMKKLERFEFD- 182
            E+ + A+++ +++ ++ +  L M  SVT+++PN +D  K SGY+V ++ + +++FEFD 
Sbjct: 110 FEEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDS 169

Query: 183 -KTTPPVDICN 192
            K+T   + CN
Sbjct: 170 NKSTSVYETCN 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,672,540
Number of extensions: 134089
Number of successful extensions: 1248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)