Os04g0443500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1). Splice isoform 3.
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Os04g0443500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1). Splice isoform 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.65 | 0.138 | 12.7 | -0.11 | 0.112 | 0.358 | -0.183 | 0.303 | 0.13 | 9.21 | 19.7 | 6360 | -- | -- |
| 8.68 | 0.137 | 12.7 | -0.115 | 0.113 | 0.244 | -0.185 | -- | 0.129 | 9.23 | 21 | 6564 | -- | -- |
| 8.75 | 0.138 | 12.7 | -0.119 | 0.115 | 0.371 | -- | 0.327 | 0.129 | 8.74 | 19.7 | 6378 | -- | -- |
| 8.79 | 0.138 | 12.7 | -0.125 | 0.116 | 0.251 | -- | -- | 0.121 | 8.74 | 21 | 6564 | -- | -- |
| 9.46 | 0.143 | 12.7 | -0.107 | -- | 0.36 | -- | 0.328 | 0.135 | -- | 19.7 | 5998 | -- | -- |
| 10.02 | 0.148 | 12.7 | 0.0544 | 0.106 | -- | -0.192 | -- | 0.203 | 9.15 | -- | -- | -- | -- |
| 10.14 | 0.149 | 12.7 | 0.0469 | 0.109 | -- | -- | -- | 0.203 | 8.56 | -- | -- | -- | -- |
| 9.5 | 0.144 | 12.7 | -0.129 | -- | 0.243 | -- | -- | 0.117 | -- | 21 | 7160 | -- | -- |
| 9.04 | 0.14 | 12.7 | -- | 0.113 | 0.185 | -- | -- | 0.147 | 8.81 | 21.5 | 6581 | -- | -- |
| 10.81 | 0.154 | 12.7 | 0.0473 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 10.19 | 0.149 | 12.7 | -- | 0.109 | -- | -- | -- | 0.198 | 8.53 | -- | -- | -- | -- |
| 9.75 | 0.145 | 12.7 | -- | -- | 0.183 | -- | -- | 0.148 | -- | 21.43 | 5881 | -- | -- |
| 10.86 | 0.154 | 12.7 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 21 | 8.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 17 |
| 103 | 8.42 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 17 |
| 134 | 8.52 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 18 |
| 135 | 8.52 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 150 | 8.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 169 | 8.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 180 | 8.58 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 181 | 8.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 183 | 8.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 201 | 8.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 204 | 8.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 218 | 8.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 22 |
| 235 | 8.63 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 6 |
| 261 | 8.64 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 266 | 8.64 | wind | 9 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 279 | 8.65 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 280 | 8.65 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 418 | 8.72 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 5 |
| 440 | 8.73 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 442 | 8.73 | wind | 5 | 270 | < th | dose independent | rect. | 17 | 18 |
| 481 | 8.74 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 507 | 8.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 21 |
| 513 | 8.75 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 514 | 8.75 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 3 |
| 516 | 8.75 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 521 | 8.75 | humidity | 60 | 43200 | < th | dose dependent | sin | 2 | NA |
| 524 | 8.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 525 | 8.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 553 | 8.76 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 555 | 8.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 556 | 8.76 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 573 | 8.76 | humidity | 60 | 43200 | < th | dose dependent | sin | 0 | NA |
| 603 | 8.77 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 604 | 8.77 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 607 | 8.77 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 625 | 8.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 12 |
| 664 | 8.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 668 | 8.77 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 671 | 8.78 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 672 | 8.78 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 675 | 8.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 680 | 8.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 694 | 8.78 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 696 | 8.78 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 698 | 8.78 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 703 | 8.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 6 |
| 781 | 8.78 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 788 | 8.79 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 792 | 8.79 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 817 | 8.79 | wind | 7 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 836 | 8.79 | wind | 9 | 30 | < th | dose dependent | rect. | 20 | 17 |
| 856 | 8.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 863 | 8.80 | humidity | 60 | 43200 | > th | dose independent | sin | 9 | NA |
| 864 | 8.80 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 886 | 8.80 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 962 | 8.81 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 1000 | 8.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 8 |