BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0443500 Os04g0443500|AK105357
         (343 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10050.1  | chr4:6284620-6287186 REVERSE LENGTH=351            492   e-139

>AT4G10050.1 | chr4:6284620-6287186 REVERSE LENGTH=351
          Length = 350

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 226/308 (73%), Positives = 277/308 (89%)

Query: 36  HSLHKYAPLDWSAYFDEERRVAIPDTEDVFNVYMARSEGPVVFCLHGGGYSGLSFALAAS 95
           +S  KY+P++W +YFD+E  ++I  ++DVF+VYMA +EGPVVFCLHGGGYSGLSF++ AS
Sbjct: 40  NSSEKYSPVEWKSYFDKEDDISITGSDDVFHVYMAGNEGPVVFCLHGGGYSGLSFSIVAS 99

Query: 96  RMKEKARVVSMDLRGHGKSTTSDDSDLSIETLSSDVIAVLRTLYGDSPPAIILVGHSMGG 155
           ++KEKARVV+MDLRGHGKS + ++ +LS+ET+S+DV+AV++ LYGDSPPAI+LVGHSMGG
Sbjct: 100 KIKEKARVVAMDLRGHGKSVSENELELSLETMSNDVLAVIKELYGDSPPAIVLVGHSMGG 159

Query: 156 SVAIHVAAKKVIRNLHGLVVIDVVEGTAMASLIHMQKILANRAQHFPSIEKAIEWSVKGG 215
           SVA+ VAA K + +L GLVV+DVVEGTA++SLIHMQKIL+NR QHFPSIEKAIE+SV+GG
Sbjct: 160 SVAVQVAANKTLPSLAGLVVVDVVEGTAISSLIHMQKILSNRMQHFPSIEKAIEYSVRGG 219

Query: 216 PLRNIDSARVSIPSTLKYDESRECYTYRTPLEETEKYWKGWYEGLSEKFLSCPVQKVLLL 275
            LRNIDSARVSIP+TLKYD+S+ CY YRT LEETE+YWKGWY+GLSEKFLS PV K+LLL
Sbjct: 220 SLRNIDSARVSIPTTLKYDDSKHCYVYRTRLEETEQYWKGWYDGLSEKFLSSPVPKLLLL 279

Query: 276 AGTDRLDRALTIGQMQGKFQMVVVRHTGHAIQEDVPEEFASHILNFIARNKIGPNGVEIP 335
           AGTDRLDR LTIGQMQGKFQM+VV+HTGHAIQEDVPEEFA+ +LNFI+RN+IGP+GVEIP
Sbjct: 280 AGTDRLDRTLTIGQMQGKFQMIVVKHTGHAIQEDVPEEFANLVLNFISRNRIGPHGVEIP 339

Query: 336 GLIKKWQH 343
           G+ K  Q 
Sbjct: 340 GMWKPSQQ 347



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,953,464
Number of extensions: 274387
Number of successful extensions: 837
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)