Os04g0440100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonsense-mediated decay UPF3 domain containing protein.
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Os04g0440100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonsense-mediated decay UPF3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.86 | 0.318 | 11.8 | -0.777 | 0.0571 | 0.533 | -0.209 | -1.19 | -0.337 | 9.76 | 20.69 | 6309 | -- | -- |
| 46.94 | 0.319 | 11.7 | -0.457 | 0.0442 | 0.558 | -0.219 | -- | -0.265 | 9.88 | 17.99 | 7567 | -- | -- |
| 46.02 | 0.316 | 11.8 | -0.783 | 0.0557 | 0.534 | -- | -1.19 | -0.336 | 9.89 | 20.81 | 6282 | -- | -- |
| 46.75 | 0.318 | 11.7 | -0.499 | 0.0808 | 0.706 | -- | -- | -0.252 | 11.2 | 13.09 | 6469 | -- | -- |
| 46.18 | 0.317 | 11.8 | -0.792 | -- | 0.53 | -- | -1.23 | -0.333 | -- | 20.94 | 6115 | -- | -- |
| 54.78 | 0.347 | 11.7 | -0.151 | 0.0328 | -- | -0.225 | -- | -0.0865 | 10.3 | -- | -- | -- | -- |
| 54.99 | 0.347 | 11.7 | -0.16 | 0.0339 | -- | -- | -- | -0.0871 | 10.3 | -- | -- | -- | -- |
| 46.92 | 0.319 | 11.7 | -0.497 | -- | 0.687 | -- | -- | -0.246 | -- | 11.9 | 6198 | -- | -- |
| 51.48 | 0.334 | 11.7 | -- | 0.0811 | 0.447 | -- | -- | -0.138 | 10.2 | 13.04 | 2094 | -- | -- |
| 55.06 | 0.347 | 11.7 | -0.161 | -- | -- | -- | -- | -0.0872 | -- | -- | -- | -- | -- |
| 55.66 | 0.349 | 11.7 | -- | 0.0349 | -- | -- | -- | -0.0693 | 10.6 | -- | -- | -- | -- |
| 50.67 | 0.332 | 11.7 | -- | -- | 0.332 | -- | -- | -0.104 | -- | 25.8 | 6222 | -- | -- |
| 55.74 | 0.348 | 11.7 | -- | -- | -- | -- | -- | -0.0694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 45.41 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 3 | 45.50 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 4 | 45.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 16 | 45.84 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 25 | 46.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 27 | 46.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 29 | 46.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 32 | 46.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 35 | 46.30 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 36 | 46.30 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 62 | 46.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 64 | 46.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 72 | 46.48 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 124 | 46.60 | temperature | 25 | 30 | > th | dose dependent | rect. | 22 | 9 |
| 129 | 46.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 137 | 46.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 145 | 46.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 149 | 46.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 173 | 46.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 174 | 46.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 176 | 46.67 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 195 | 46.69 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 216 | 46.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 217 | 46.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 219 | 46.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 225 | 46.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 248 | 46.73 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 250 | 46.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 302 | 46.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 307 | 46.78 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 322 | 46.80 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 328 | 46.80 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 332 | 46.80 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 19 |
| 334 | 46.80 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 337 | 46.81 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 379 | 46.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 14 |
| 389 | 46.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 446 | 46.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 452 | 46.84 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 529 | 46.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 544 | 46.86 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 627 | 46.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 636 | 46.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 714 | 46.91 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 716 | 46.91 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 727 | 46.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 745 | 46.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 14 |
| 852 | 46.94 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 864 | 46.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 893 | 46.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 969 | 46.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |