BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0440100 Os04g0440100|AK105415
(507 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33980.2 | chr1:12351719-12354401 FORWARD LENGTH=485 277 1e-74
>AT1G33980.2 | chr1:12351719-12354401 FORWARD LENGTH=485
Length = 484
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 279/531 (52%), Gaps = 78/531 (14%)
Query: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNA--SQKNHRYSRLYL 65
+K+P + KVV+R LPP+++Q ++ Q+D RF RY+W FRPG + KN +YSR Y+
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 66 NFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDPEY 125
+FK PEDV EFA FNGHVFVNEKGAQFKA+VEYAPSQ+V K + KKD R+G+I KDP+Y
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 126 LEFLESISKPAEHLPSAEIQLXXXXXXXXXXXXXPPVVTPLMVYVRQQRAAKSMAQRSGS 185
LEFL+ I++P E+LPSAEIQL P+VTPLM ++RQ+RA Q G
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQ--GL 178
Query: 186 SRLSRKVAGVVTS-----SPSPSKRGSEKRRTSASTQYVLRENAKEKP---TYILVPKRD 237
S + R SP PSKR SEK++ YV +E++K P T + +
Sbjct: 179 SDIRRGGRRTRVVSANKPSPRPSKRNSEKKK------YVEKESSKNVPRKTTADVSSSKP 232
Query: 238 EHAQREK-------DATSGGIS----GSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQ 286
++ Q + T+ I G A ++ K+KI+LL+ + R + + +Q
Sbjct: 233 DYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQH 292
Query: 287 SGTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTS---QHDQEGHIITAE--KR 341
T + + + SRQ+ + + GR+IK IL + R +S Q +Q AE KR
Sbjct: 293 IDTNLSRNS-TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKR 351
Query: 342 PPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRR 401
P R N R A K++ H SG ISEK ER RN+DRPDR +WAPRR
Sbjct: 352 PSRPANTR----------AGKDY--------HTSGTISEKQERRTRNKDRPDRVMWAPRR 393
Query: 402 ---YDKXXXXXXXXXXXXXXPMQQHSGENFCQQADGHGERKIDPRGHGGIRGGPVENGH- 457
D+ Q SGE + GH +ENG
Sbjct: 394 DGSEDQPLSSAGNNGEVKDRMFSQRSGE-VVNSSGGHT----------------LENGSA 436
Query: 458 RHANRRGPPRGLKEMEISASTSDGKPSKRASANY-GAHERQVWVQKSSSAT 507
RH++RR R KE + +GK S+R S +HE+Q+W+QK SS T
Sbjct: 437 RHSSRRVGGRNRKEEVV---IGEGKTSRRGSGGGPSSHEKQMWIQKPSSGT 484
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,520,052
Number of extensions: 437926
Number of successful extensions: 1063
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)