Os04g0440000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0440000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.1 | 0.221 | 12 | 0.188 | 0.78 | -0.716 | 0.678 | -1.03 | 0.186 | 3.15 | 25.2 | 283 | -- | -- |
| 23.42 | 0.225 | 12 | 0.0563 | 0.763 | -0.584 | 0.465 | -- | 0.179 | 3.13 | 25.4 | 251 | -- | -- |
| 23.32 | 0.225 | 12 | 0.128 | 0.772 | -0.681 | -- | -0.729 | 0.166 | 3.29 | 25.3 | 338 | -- | -- |
| 23.95 | 0.228 | 12 | 0.0236 | 0.764 | -0.623 | -- | -- | 0.151 | 3.22 | 25.3 | 263 | -- | -- |
| 45.75 | 0.315 | 12 | 0.175 | -- | -0.787 | -- | -1.16 | 0.173 | -- | 26.1 | 2541 | -- | -- |
| 29.16 | 0.253 | 12 | 0.181 | 0.68 | -- | 0.448 | -- | 0.28 | 3.01 | -- | -- | -- | -- |
| 29.81 | 0.256 | 12 | 0.171 | 0.683 | -- | -- | -- | 0.277 | 3.1 | -- | -- | -- | -- |
| 47.35 | 0.32 | 12 | -0.0898 | -- | -0.685 | -- | -- | 0.113 | -- | 26.8 | 2550 | -- | -- |
| 23.92 | 0.228 | 12 | -- | 0.785 | -0.639 | -- | -- | 0.144 | 3.22 | 25.34 | 257 | -- | -- |
| 56.47 | 0.351 | 12 | 0.2 | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
| 30.59 | 0.259 | 12 | -- | 0.687 | -- | -- | -- | 0.258 | 3.1 | -- | -- | -- | -- |
| 47.5 | 0.321 | 12 | -- | -- | -0.647 | -- | -- | 0.132 | -- | 27 | 2554 | -- | -- |
| 57.53 | 0.354 | 12 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 15 | 21.17 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 19 | 21.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 21 | 21.27 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 46 | 21.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 93 | 21.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 107 | 21.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 123 | 21.85 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 138 | 21.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 168 | 21.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 187 | 22.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 188 | 22.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 198 | 22.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 220 | 22.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 226 | 22.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 233 | 22.13 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 246 | 22.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 252 | 22.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 274 | 22.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 281 | 22.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 336 | 22.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 389 | 22.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 402 | 22.36 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 411 | 22.37 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 412 | 22.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 540 | 22.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 609 | 22.56 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 18 |
| 888 | 22.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 894 | 22.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 1000 | 22.82 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |