BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0440000 Os04g0440000|AK101691
         (329 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27285.1  | chr2:11676079-11677897 REVERSE LENGTH=324          167   8e-42
AT2G27280.1  | chr2:11673826-11675613 REVERSE LENGTH=428          154   5e-38
AT1G55928.1  | chr1:20917471-20918367 FORWARD LENGTH=299          146   1e-35

>AT2G27285.1 | chr2:11676079-11677897 REVERSE LENGTH=324
          Length = 323

 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 134/215 (62%), Gaps = 11/215 (5%)

Query: 44  ILRQSYKKRSQQKVEEQQKKAMEEDPSVFAYDEVYDDMKQKAALPKMQDRVVRESKYIAA 103
           I RQ+ K ++ +++EEQ KKA+EEDPS F+YDEVYDDMKQKA LP+MQDR  R+ +YI  
Sbjct: 41  ISRQATKTKAHKEIEEQHKKALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQN 100

Query: 104 LKEKAEQRKREQDIIYERKLQKERSKEDHLYGDKDKFVTSAYXXXXXXXXXXXXXXXXXX 163
           L ++AE+R++E +I+YERKL KER K++HL+ DK+KFVT AY                  
Sbjct: 101 LMKQAERREKEHEIVYERKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRE 160

Query: 164 XXXXXXDVTKKKDLSDFYFGLSKNVAFGAQ------THDNTKHAKPEKLDEKVQDAKTSK 217
                 DVTKKKDLSDFYF + KNVAFGA+           +  K EKL+E+ +  K  +
Sbjct: 161 LREERDDVTKKKDLSDFYFNIGKNVAFGAREVEAKEAEKLEEQRKAEKLEEQRKAEKLEE 220

Query: 218 VGAEVS-----DRSPKHKRDSGEGAETANESRSVE 247
           +  EV+      +SP+ +     G   ++ S+S+E
Sbjct: 221 LRKEVTRVEKKRKSPEKEVSPDSGEFGSSRSKSLE 255



>AT2G27280.1 | chr2:11673826-11675613 REVERSE LENGTH=428
          Length = 427

 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 104/150 (69%)

Query: 44  ILRQSYKKRSQQKVEEQQKKAMEEDPSVFAYDEVYDDMKQKAALPKMQDRVVRESKYIAA 103
           I RQ+ K +S +K+E+Q KKA+EEDPS FAYDEVYDD+K +AALP+MQDR   +S+YI  
Sbjct: 183 ISRQASKTKSLKKIEKQHKKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQH 242

Query: 104 LKEKAEQRKREQDIIYERKLQKERSKEDHLYGDKDKFVTSAYXXXXXXXXXXXXXXXXXX 163
           + ++AE+R++E +I+YERKL KER+K++HLY DK+KFVT  +                  
Sbjct: 243 IMKQAERREKEHEIVYERKLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRE 302

Query: 164 XXXXXXDVTKKKDLSDFYFGLSKNVAFGAQ 193
                 DVTKK DLS+FY  + KNVAFGA+
Sbjct: 303 LREERDDVTKKNDLSEFYINIGKNVAFGAR 332



>AT1G55928.1 | chr1:20917471-20918367 FORWARD LENGTH=299
          Length = 298

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 9/223 (4%)

Query: 44  ILRQSYKKRSQQKVEEQQKKAMEEDPSVFAYDEVYDDMKQKAALPKMQDRV-VRESKYIA 102
           I RQ+ K +S +K EEQ KKA+EEDP  FAYDEVYDD KQ+A LP++ +R    +  Y  
Sbjct: 47  ISRQASKTKSLKKFEEQHKKALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQ 106

Query: 103 ALKEKAEQRKREQDIIYERKLQKERSKEDHLYGDKDKFVTSAYXXXXXXXXXXXXXXXXX 162
            +KEKA++R++E++I+YERKL KER+KE HL+ D+ K VT +Y                 
Sbjct: 107 LMKEKADRRQKEREIVYERKLAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLR 166

Query: 163 XXXXXXXDVTKKKDLSDFYFGLSKNVAFGAQTHDNTKHAKPEKLDEKVQDAKTSKVGAEV 222
                  DVTKKKDLSDFYF + KNVAFGA+   + K  + E+L E+ +  K  ++  ++
Sbjct: 167 ELGEEKDDVTKKKDLSDFYFNIGKNVAFGAR---DIKARETERLKEQRKVPKLEELREKM 223

Query: 223 SDRSPKH-----KRDSGEGAETANESRSVEEPATTQSRDSAAA 260
              SP+       RD G       E +  E  A+ +  +S A 
Sbjct: 224 KTESPERVVLPDSRDIGSSCRIIVELQEAEHVASEEKMNSDAT 266



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.123    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,457,678
Number of extensions: 161372
Number of successful extensions: 1117
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 3
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 112 (47.8 bits)