Os04g0436400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0436400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.2 | 0.385 | 8.65 | -0.869 | 1.04 | -1.03 | 0.186 | 0.721 | 0.377 | 1.09 | 76.98 | 1071 | -- | -- |
| 67.7 | 0.383 | 8.65 | -0.919 | 1.03 | -0.97 | 0.316 | -- | 0.375 | 1.08 | 77.35 | 1065 | -- | -- |
| 67.32 | 0.382 | 8.64 | -0.866 | 1.04 | -1.04 | -- | 0.845 | 0.377 | 1.07 | 77 | 1061 | -- | -- |
| 68.1 | 0.384 | 8.66 | -0.931 | 1.03 | -0.962 | -- | -- | 0.373 | 1.08 | 77.58 | 1061 | -- | -- |
| 96.6 | 0.46 | 8.64 | -1.03 | -- | -1.08 | -- | -0.026 | 0.392 | -- | 85 | 1694 | -- | -- |
| 85.76 | 0.434 | 8.64 | -1.08 | 0.826 | -- | 0.191 | -- | 0.42 | 1.55 | -- | -- | -- | -- |
| 85.9 | 0.434 | 8.64 | -1.09 | 0.826 | -- | -- | -- | 0.419 | 1.56 | -- | -- | -- | -- |
| 92.54 | 0.45 | 8.63 | -1.07 | -- | -1.17 | -- | -- | 0.444 | -- | 118.4 | 21 | -- | -- |
| 90.13 | 0.442 | 8.64 | -- | 1.04 | -1.13 | -- | -- | 0.444 | 1.09 | 76.22 | 1075 | -- | -- |
| 127.62 | 0.528 | 8.63 | -1.06 | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
| 117.26 | 0.507 | 8.61 | -- | 0.806 | -- | -- | -- | 0.54 | 1.51 | -- | -- | -- | -- |
| 122.63 | 0.517 | 8.6 | -- | -- | -1.12 | -- | -- | 0.555 | -- | 92.93 | 38 | -- | -- |
| 157.12 | 0.585 | 8.6 | -- | -- | -- | -- | -- | 0.554 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.29 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 3 |
| 2 | 65.58 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 3 | 65.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 4 | 65.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 7 | 65.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 12 | 66.09 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 6 |
| 34 | 66.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 35 | 66.54 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 47 | 66.71 | humidity | 70 | 720 | < th | dose independent | rect. | 12 | 8 |
| 62 | 66.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 73 | 66.92 | humidity | 70 | 720 | < th | dose independent | rect. | 12 | 21 |
| 82 | 67.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 89 | 67.10 | humidity | 70 | 720 | < th | dose independent | sin | 16 | NA |
| 104 | 67.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 125 | 67.41 | humidity | 80 | 720 | < th | dose dependent | sin | 18 | NA |
| 134 | 67.49 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 178 | 67.67 | humidity | 50 | 720 | > th | dose dependent | sin | 19 | NA |
| 184 | 67.69 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 19 |
| 203 | 67.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 208 | 67.82 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 21 |
| 238 | 67.97 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 21 |
| 261 | 68.06 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 19 |
| 266 | 68.08 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 14 |
| 280 | 68.14 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 12 |
| 286 | 68.16 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 312 | 68.29 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 424 | 68.67 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 20 |
| 428 | 68.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 465 | 68.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 598 | 69.02 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 13 |
| 777 | 69.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 823 | 69.36 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 845 | 69.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 846 | 69.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 865 | 69.41 | humidity | 80 | 720 | < th | dose dependent | no | NA | NA |
| 928 | 69.47 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 941 | 69.50 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 6 |
| 942 | 69.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 963 | 69.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 970 | 69.56 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 999 | 69.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 14 |