BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0436400 Os04g0436400|AK067679
         (70 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38880.1  | chr5:15563621-15568804 REVERSE LENGTH=797           70   3e-13

>AT5G38880.1 | chr5:15563621-15568804 REVERSE LENGTH=797
          Length = 796

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 3   EDLSKAINLVQTRRNLVENDRVLLNPAHRAQQEYERVASCC--LSGEQEKMVSERCLSEL 60
           EDL+KAI+LV  R++LVE+   LL+ A RAQQ+YER  + C  L+ EQE  +S++ L EL
Sbjct: 673 EDLAKAIDLVHIRQDLVESGHSLLDHAFRAQQKYERTTNYCLDLASEQENTISDQWLPEL 732

Query: 61  RNAVQEAQ 68
           R AVQ AQ
Sbjct: 733 RTAVQNAQ 740



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,309,766
Number of extensions: 38098
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)