Os04g0435500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutathione S-transferase, N-terminal domain containing protein.
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Os04g0435500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutathione S-transferase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.38 | 0.333 | 9.69 | -0.476 | 0.933 | 0.817 | -0.596 | -1.56 | -0.112 | 16 | 57 | 189 | -- | -- |
| 52.22 | 0.337 | 9.68 | -0.467 | 0.936 | 0.702 | -0.869 | -- | -0.128 | 15.9 | 54.9 | 221 | -- | -- |
| 51.35 | 0.334 | 9.69 | -0.5 | 0.929 | 0.811 | -- | -1.7 | -0.122 | 16 | 57 | 188 | -- | -- |
| 54.22 | 0.343 | 9.68 | -0.461 | 0.951 | 0.63 | -- | -- | -0.138 | 16 | 54.98 | 204 | -- | -- |
| 73.64 | 0.4 | 9.66 | -0.494 | -- | 0.831 | -- | -0.829 | -0.18 | -- | 76 | 180 | -- | -- |
| 59.69 | 0.362 | 9.69 | -0.396 | 1.08 | -- | -0.531 | -- | -0.174 | 16.1 | -- | -- | -- | -- |
| 60.48 | 0.364 | 9.69 | -0.402 | 1.08 | -- | -- | -- | -0.177 | 16.2 | -- | -- | -- | -- |
| 74.47 | 0.402 | 9.69 | -0.472 | -- | 0.781 | -- | -- | -0.217 | -- | 74.27 | 200 | -- | -- |
| 58.89 | 0.357 | 9.68 | -- | 0.967 | 0.498 | -- | -- | -0.0855 | 16.3 | 56 | 94 | -- | -- |
| 124 | 0.52 | 9.69 | -0.446 | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
| 64.74 | 0.376 | 9.68 | -- | 1.09 | -- | -- | -- | -0.132 | 16.2 | -- | -- | -- | -- |
| 80.32 | 0.417 | 9.68 | -- | -- | 0.769 | -- | -- | -0.162 | -- | 74.24 | 188 | -- | -- |
| 129.24 | 0.531 | 9.68 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.28 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 21 |
| 10 | 49.44 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 22 |
| 11 | 49.44 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 19 | 49.66 | humidity | 50 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 20 | 49.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 49 | 49.97 | humidity | 70 | 90 | < th | dose dependent | sin | 10 | NA |
| 57 | 50.07 | humidity | 60 | 270 | > th | dose independent | rect. | 10 | 12 |
| 64 | 50.11 | humidity | 60 | 270 | < th | dose independent | rect. | 14 | 22 |
| 67 | 50.13 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 21 |
| 89 | 50.31 | humidity | 50 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 93 | 50.36 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 94 | 50.36 | humidity | 50 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 96 | 50.38 | humidity | 60 | 270 | < th | dose dependent | sin | 2 | NA |
| 100 | 50.41 | humidity | 60 | 90 | > th | dose independent | sin | 10 | NA |
| 129 | 50.55 | humidity | 60 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 156 | 50.66 | humidity | 60 | 90 | < th | dose independent | sin | 10 | NA |
| 199 | 50.81 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 228 | 50.85 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 23 |
| 312 | 51.05 | humidity | 60 | 270 | < th | dose dependent | no | NA | NA |
| 452 | 51.14 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 499 | 51.27 | humidity | 60 | 90 | < th | dose independent | rect. | 17 | 18 |
| 500 | 51.27 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 21 |
| 510 | 51.29 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 521 | 51.32 | humidity | 90 | 30 | < th | dose dependent | no | NA | NA |
| 549 | 51.35 | humidity | 50 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 588 | 51.50 | humidity | 60 | 720 | > th | dose independent | rect. | 18 | 19 |
| 607 | 51.52 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 11 |
| 624 | 51.53 | humidity | 60 | 270 | < th | dose independent | no | NA | NA |
| 844 | 51.61 | humidity | 60 | 270 | > th | dose independent | no | NA | NA |
| 933 | 51.71 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 7 |
| 936 | 51.72 | humidity | 60 | 270 | > th | dose independent | sin | 21 | NA |
| 981 | 51.80 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 988 | 51.81 | humidity | 50 | 30 | > th | dose dependent | no | NA | NA |
| 995 | 51.83 | humidity | 60 | 270 | < th | dose independent | sin | 23 | NA |