BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0435500 Os04g0435500|AK060125
(265 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77290.1 | chr1:29038917-29039815 FORWARD LENGTH=267 351 2e-97
AT1G02940.1 | chr1:663079-664128 REVERSE LENGTH=257 72 3e-13
AT2G02930.1 | chr2:851348-852106 REVERSE LENGTH=213 66 2e-11
AT4G02520.1 | chr4:1110673-1111531 REVERSE LENGTH=213 64 8e-11
AT2G30870.1 | chr2:13141490-13142392 FORWARD LENGTH=216 64 9e-11
AT2G30860.1 | chr2:13139132-13140057 FORWARD LENGTH=216 61 6e-10
AT1G02920.1 | chr1:658886-659705 REVERSE LENGTH=210 60 1e-09
AT1G02950.2 | chr1:665308-666420 REVERSE LENGTH=246 54 8e-08
AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224 50 1e-06
AT1G02930.1 | chr1:661363-662191 REVERSE LENGTH=209 50 1e-06
>AT1G77290.1 | chr1:29038917-29039815 FORWARD LENGTH=267
Length = 266
Score = 351 bits (901), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/266 (61%), Positives = 212/266 (79%), Gaps = 1/266 (0%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
MQLYHHPYS+DSQ+VR+ALEEKGIDYTSYHVNP+TGK+M+ +FFRMNP+AKLPVF+NG+H
Sbjct: 1 MQLYHHPYSIDSQRVRLALEEKGIDYTSYHVNPITGKHMDPSFFRMNPNAKLPVFRNGSH 60
Query: 61 VIYRAFDIIQYLDRLSVHLSG-EIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVS 119
+I +II+YL+R++ SG E N EV +WM+K+ W K+FTL H P R +VS
Sbjct: 61 IILDTIEIIEYLERIAEVSSGIEDATFNREVVEWMRKIREWESKLFTLAHIPDNRRLYVS 120
Query: 120 KFIRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLN 179
KF+R V+IARMAE+PDLAS YH KLREAY+TEDKLKDP +++S++ L +LLD+VE +L
Sbjct: 121 KFLRMVVIARMAESPDLASAYHRKLREAYDTEDKLKDPGALRRSKDHLLRLLDEVETKLE 180
Query: 180 NGKYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPSYKVAIGKF 239
YLAG+EFS AD + IP+LAR++LLDL+EEYI+ R L EY+ LV++RPSYK IG++
Sbjct: 181 GTTYLAGNEFSMADVMLIPVLARLSLLDLEEEYISSRKNLAEYWALVRRRPSYKKVIGRY 240
Query: 240 FGGWKKYRTLFKTSFFLCVRTLFRKY 265
F GW+KY TL KT F+ VR+L RKY
Sbjct: 241 FNGWRKYATLVKTWMFVRVRSLLRKY 266
>AT1G02940.1 | chr1:663079-664128 REVERSE LENGTH=257
Length = 256
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 29/235 (12%)
Query: 2 QLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHV 61
++Y +PYS ++++V L EKG+ Y VN + G +F +NP ++PVF +G
Sbjct: 40 KIYGYPYSTNTRRVLAVLHEKGLSYDPITVNLIAGDQKKPSFLAINPFGQVPVFLDGGLK 99
Query: 62 IYRAFDIIQYLDRLSVHLSGEIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVSKF 121
+ + I +Y+ +VH S +N + Y+ M W + F
Sbjct: 100 LTESRAISEYI--ATVHKSRGTQLLNYKSYKTMGTQRMW---------------MAIESF 142
Query: 122 IRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLNNG 181
L + + + MY K D ++ ++E +L K+LD E +L N
Sbjct: 143 EFDPLTSTLTWEQSIKPMYGLKT-----------DYKVVNETEAKLEKVLDIYEERLKNS 191
Query: 182 KYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPSYKVAI 236
+LA + F+ AD +P + + ++N RP + + + RP++K A
Sbjct: 192 SFLASNSFTMADLYHLPNIQYLMDTHTKRMFVN-RPSVRRWVAEITARPAWKRAC 245
>AT2G02930.1 | chr2:851348-852106 REVERSE LENGTH=213
Length = 212
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 27/231 (11%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
++++ HP S +++V +AL EK +D+ HV G++ F NP ++P F++G
Sbjct: 4 IKVFGHPASTSTRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDL 63
Query: 61 VIYRAFDIIQYLDRLSVHLSGEIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVSK 120
++ + I QY+ + ++P DS N + + I+
Sbjct: 64 KLFESRAITQYIAHRYENQGTNLLP-----------ADSKNIAQYAIMSIGIQVEAHQFD 112
Query: 121 FIRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLNN 180
+ A LA K T D ++ + E +L+K+LD EA+L
Sbjct: 113 PV----------ASKLAWEQVFKFNYGLNT-----DQAVVAEEEAKLAKVLDVYEARLKE 157
Query: 181 GKYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPS 231
KYLAG+ F+ D IP++ + L ++ RPR+ E+ + +RP+
Sbjct: 158 FKYLAGETFTLTDLHHIPVIQYL-LGTPTKKLFTERPRVNEWVAEITKRPA 207
>AT4G02520.1 | chr4:1110673-1111531 REVERSE LENGTH=213
Length = 212
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 27/231 (11%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
++++ HP S+ +++V +AL EK +D+ HV G++ F NP ++P F++G
Sbjct: 4 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDL 63
Query: 61 VIYRAFDIIQYLDRLSVHLSGEIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVSK 120
++ + I QY+ + ++ + DS N + + ++ V
Sbjct: 64 KLFESRAITQYIAHRYENQGTNLL-----------QTDSKNISQYAIMAIGMQ----VED 108
Query: 121 FIRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLNN 180
+ +++A S+Y EA ++ + E +L+K+LD EA+L
Sbjct: 109 HQFDPVASKLAFEQIFKSIYGLTTDEA-----------VVAEEEAKLAKVLDVYEARLKE 157
Query: 181 GKYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPS 231
KYLAG+ F+ D IP + + L ++ RPR+ E+ + +RP+
Sbjct: 158 FKYLAGETFTLTDLHHIPAIQYL-LGTPTKKLFTERPRVNEWVAEITKRPA 207
>AT2G30870.1 | chr2:13141490-13142392 FORWARD LENGTH=216
Length = 215
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 39/240 (16%)
Query: 5 HHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHVIYR 64
+ P S++ + L EKG+ + + +V+ + G+ + + P K+PV +G + I+
Sbjct: 6 YAPLFASSKRAVVTLVEKGVSFETVNVDLMKGEQRQPEYLAIQPFGKIPVLVDGDYKIFE 65
Query: 65 AFDIIQYLDR----LSVHLSGEIVPVNTEVYQWMQ-KVDSWNPKMFTLTHTPIKYRTFVS 119
+ I++Y+ L G+ + +V QW+ + S++P + LT
Sbjct: 66 SRAIMRYIAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLALT----------- 114
Query: 120 KFIRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLN 179
++ A + P D ++K+SEE+L+++LD EAQL+
Sbjct: 115 ---LNIVFAPLMGFP--------------------ADEKVIKESEEKLAEVLDVYEAQLS 151
Query: 180 NGKYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPSYKVAIGKF 239
+YLAGD S AD +P + I R + ++ + R ++K K+
Sbjct: 152 KNEYLAGDFVSLADLAHLPFTEYLVGPIGKAHLIKDRKHVSAWWDKISSRAAWKEVSAKY 211
>AT2G30860.1 | chr2:13139132-13140057 FORWARD LENGTH=216
Length = 215
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 39/238 (16%)
Query: 7 PYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHVIYRAF 66
P+ ++ + L EKG+ + + V+ + G++ A+ + P +P +G + I+ +
Sbjct: 8 PHFASPKRALVTLIEKGVAFETIPVDLMKGEHKQPAYLALQPFGTVPAVVDGDYKIFESR 67
Query: 67 DIIQYLDR----LSVHLSGEIVPVNTEVYQWMQ-KVDSWNPKMFTLTHTPIKYRTFVSKF 121
+++Y+ L G+ V +V QW+ + +++P + LT
Sbjct: 68 AVMRYVAEKYRSQGPDLLGKTVEDRGQVEQWLDVEATTYHPPLLNLT------------- 114
Query: 122 IRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLNNG 181
++ A + P D ++K+SEE+L+ +LD EA L+
Sbjct: 115 -LHIMFASVMGFP--------------------SDEKLIKESEEKLAGVLDVYEAHLSKS 153
Query: 182 KYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPSYKVAIGKF 239
KYLAGD S AD +P + I R + ++ + RP++K + K+
Sbjct: 154 KYLAGDFVSLADLAHLPFTDYLVGPIGKAYMIKDRKHVSAWWDDISSRPAWKETVAKY 211
>AT1G02920.1 | chr1:658886-659705 REVERSE LENGTH=210
Length = 209
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
++++ HP S +++V +AL EK +D+ H+ G++ F NP K+P F++G
Sbjct: 4 IKVFGHPASTATRRVLIALHEKNLDFEFVHIELKDGEHKKEPFIFRNPFGKVPAFEDGDF 63
Query: 61 VIYRAFDIIQYLDRLSVHLSGEIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVSK 120
++ + I QY+ ++V + ++
Sbjct: 64 KLFESRAITQYIAHFYSDKGNQLVSLGSKD------------------------------ 93
Query: 121 FIRRVLIARMAEAPDLASMYHAKLREAYETEDKLK-------DPDIMKQSEEELSKLLDD 173
IA +A ++ S + E LK D ++++ E +L+K+LD
Sbjct: 94 ------IAGIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDV 147
Query: 174 VEAQLNNGKYLAGDEFSPADSVFIPILARITLLDLDEEYINCRPRLLEYYTLVKQRPSYK 233
E +L KYLA D+F+ D IP++ + L ++ + RP + + + RPS K
Sbjct: 148 YEHRLGESKYLASDKFTLVDLHTIPVIQYL-LGTPTKKLFDERPHVSAWVADITSRPSAK 206
>AT1G02950.2 | chr1:665308-666420 REVERSE LENGTH=246
Length = 245
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 28/197 (14%)
Query: 2 QLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHV 61
+++ P+S ++++V L EK + Y V TG++ F +NP ++PVF++G+
Sbjct: 28 KVHGDPFSTNTRRVLAVLHEKRLSYEPITVKLQTGEHKTEPFLSLNPFGQVPVFEDGSVK 87
Query: 62 IYRAFDIIQYLDRLSVHLSGEIVPVNTEVYQWMQKVDSWNPKMFTLTHTPIKYRTFVSKF 121
+Y + I QY+ VH S +N ++ M + W
Sbjct: 88 LYESRAITQYI--AYVHSSRGTQLLNLRSHETMATLTMWME------------------- 126
Query: 122 IRRVLIARMAEAPDLASMYHAKLREAYETEDKLKDPDIMKQSEEELSKLLDDVEAQLNNG 181
+ A + P + ++ Y E D I+K++E L K+L+ E +L
Sbjct: 127 ----IEAHQFDPPASKLTWEQVIKPIYGLET---DQTIVKENEAILEKVLNIYEKRLEES 179
Query: 182 KYLAGDEFSPADSVFIP 198
++LA + F+ D +P
Sbjct: 180 RFLACNSFTLVDLHHLP 196
>AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224
Length = 223
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
++LY + S + +VR+AL KG+DY VN L G + F ++NP +P +G
Sbjct: 12 LKLYSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDSDFKKINPMGTVPALVDGDV 71
Query: 61 VIYRAFDIIQYLD 73
VI +F II YLD
Sbjct: 72 VINDSFAIIMYLD 84
>AT1G02930.1 | chr1:661363-662191 REVERSE LENGTH=209
Length = 208
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 MQLYHHPYSLDSQKVRMALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAH 60
++++ HP S +++V +AL EK +D+ HV G++ F NP K+P F++G
Sbjct: 4 IKVFGHPASTATRRVLIALHEKNVDFEFVHVELKDGEHKKEPFILRNPFGKVPAFEDGDF 63
Query: 61 VIYRAFDIIQYL 72
I+ + I QY+
Sbjct: 64 KIFESRAITQYI 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,845,318
Number of extensions: 247467
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 10
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)