Os04g0434300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0004 family protein.
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Os04g0434300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0004 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.42 | 0.419 | 11 | 0.64 | 0.929 | 0.761 | 0.337 | 0.474 | 0.243 | 18.7 | 7.1 | 10 | -- | -- |
| 79.6 | 0.419 | 11 | 0.649 | 0.926 | 0.751 | 0.253 | -- | 0.247 | 18.6 | 6.953 | 10 | -- | -- |
| 79.66 | 0.419 | 11 | 0.638 | 0.927 | 0.756 | -- | 0.236 | 0.247 | 18.6 | 7.01 | 10 | -- | -- |
| 79.76 | 0.419 | 11 | 0.645 | 0.927 | 0.752 | -- | -- | 0.247 | 18.6 | 6.759 | 10 | -- | -- |
| 108.87 | 0.486 | 11 | 0.577 | -- | 0.928 | -- | -1.02 | 0.202 | -- | -0.01675 | 679 | -- | -- |
| 88.56 | 0.441 | 11 | 0.663 | 0.966 | -- | 0.256 | -- | 0.243 | 17.2 | -- | -- | -- | -- |
| 88.72 | 0.441 | 11 | 0.663 | 0.968 | -- | -- | -- | 0.244 | 17.2 | -- | -- | -- | -- |
| 107.85 | 0.484 | 11 | 0.591 | -- | 0.922 | -- | -- | 0.141 | -- | -10.4 | 619 | -- | -- |
| 90.72 | 0.446 | 11 | -- | 0.919 | 0.775 | -- | -- | 0.176 | 18.6 | 7.281 | 10 | -- | -- |
| 137.72 | 0.548 | 11 | 0.629 | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
| 100.31 | 0.469 | 11 | -- | 0.956 | -- | -- | -- | 0.17 | 17.2 | -- | -- | -- | -- |
| 116.99 | 0.504 | 11 | -- | -- | 0.931 | -- | -- | 0.0692 | -- | -15.57 | 679 | -- | -- |
| 148.16 | 0.568 | 11 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.93 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 3 | 65.49 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 9 | 66.16 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 12 | 66.22 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 14 | 66.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 22 | 67.27 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 29 | 67.50 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 18 |
| 30 | 67.50 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 33 | 67.54 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 34 | 67.56 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 36 | 67.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 37 | 67.56 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 38 | 67.56 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 6 |
| 39 | 67.56 | temperature | 10.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 41 | 67.56 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 45 | 67.58 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 52 | 67.63 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 56 | 67.63 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 62 | 67.74 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 67 | 67.88 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 68 | 67.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 69 | 67.92 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 71 | 67.93 | radiation | 40.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 76 | 67.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 77 | 67.98 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 78 | 67.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 79 | 67.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 81 | 68.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 86 | 68.15 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 91 | 68.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 92 | 68.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 95 | 68.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 96 | 68.28 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 98 | 68.29 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 102 | 68.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 103 | 68.33 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 104 | 68.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 115 | 68.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 138 | 68.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 139 | 68.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 140 | 68.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 141 | 68.60 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 144 | 68.62 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 148 | 68.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 149 | 68.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 171 | 68.78 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 174 | 68.78 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 175 | 68.78 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 179 | 68.80 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 210 | 68.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 239 | 69.00 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 252 | 69.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 278 | 69.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 282 | 69.22 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 295 | 69.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 298 | 69.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 299 | 69.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 301 | 69.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 313 | 69.41 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 318 | 69.44 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 319 | 69.44 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 341 | 69.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 353 | 69.62 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 358 | 69.64 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 373 | 69.67 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 393 | 69.77 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 18 |
| 394 | 69.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 400 | 69.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 402 | 69.81 | humidity | 50.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 404 | 69.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 420 | 69.90 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 429 | 69.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 450 | 70.02 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 456 | 70.04 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 465 | 70.07 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 475 | 70.12 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 478 | 70.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 480 | 70.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 481 | 70.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 484 | 70.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 485 | 70.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 486 | 70.13 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 536 | 70.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 537 | 70.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 545 | 70.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 7 |
| 554 | 70.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 581 | 70.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 585 | 70.38 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 588 | 70.38 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 589 | 70.38 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 591 | 70.38 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 606 | 70.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 607 | 70.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 608 | 70.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 623 | 70.48 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 643 | 70.54 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 648 | 70.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 663 | 70.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 667 | 70.59 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 671 | 70.61 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 672 | 70.61 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 675 | 70.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 677 | 70.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 689 | 70.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 697 | 70.68 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 703 | 70.71 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 731 | 70.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 736 | 70.81 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 752 | 70.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 765 | 70.89 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 770 | 70.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 777 | 70.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 778 | 70.95 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 780 | 70.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 782 | 70.96 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 783 | 70.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 785 | 70.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 786 | 70.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 794 | 70.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 801 | 71.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 803 | 71.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 804 | 71.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 807 | 71.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 808 | 71.00 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 810 | 71.00 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 826 | 71.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 827 | 71.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 828 | 71.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 829 | 71.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 844 | 71.08 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 866 | 71.12 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 868 | 71.12 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 883 | 71.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 897 | 71.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 898 | 71.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 959 | 71.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |