BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0434300 Os04g0434300|AK101879
         (621 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72090.1  | chr1:27123617-27126767 FORWARD LENGTH=602          787   0.0  
AT4G36390.1  | chr4:17194746-17197054 REVERSE LENGTH=641          124   2e-28

>AT1G72090.1 | chr1:27123617-27126767 FORWARD LENGTH=602
          Length = 601

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/510 (74%), Positives = 430/510 (84%), Gaps = 16/510 (3%)

Query: 29  KPKRPRSSRVAQTRPQ-----------PEARIPGTQTIYVKTFGCSHNQSDSEYMSGQLS 77
            PK  +S R++    Q           P  +IPGTQTIY+KTFGCSHNQSDSEYM+GQLS
Sbjct: 29  NPKTNKSKRISSKPDQITASNRDSLAPPSMKIPGTQTIYIKTFGCSHNQSDSEYMAGQLS 88

Query: 78  AFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVPQGSRDLKE 137
           AFGYA+TE PE ADLWLINTCTVK+PSQSAM+TLI++ +S  KPLV+AGCVPQGSRDLKE
Sbjct: 89  AFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLITRGRSGKKPLVIAGCVPQGSRDLKE 148

Query: 138 LEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEILPINVGCL 197
           LEG+SV+GVQQIDRVVE+VEETLKGHEVRLL+RKTLP+LDLPKVR+N FIEILPINVGCL
Sbjct: 149 LEGVSVVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRRNNFIEILPINVGCL 208

Query: 198 GACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDIGTNLPNLL 257
           GACTYCKTKHARGHLGSYT++SLV+RV+ V+SEGV+EIWLSSEDTGAYGRDIG NLP LL
Sbjct: 209 GACTYCKTKHARGHLGSYTVDSLVERVRTVISEGVKEIWLSSEDTGAYGRDIGVNLPILL 268

Query: 258 NGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSGSDAVLTAM 317
           N I  ELP+D+STMLRIGMTNPPFILEHLKEIA+VL HPCVY+FLHVPVQSGSD+VLTAM
Sbjct: 269 NAIVKELPSDQSTMLRIGMTNPPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAM 328

Query: 318 NREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHISQ 377
           NREYT SEFR VVDTL ELVPGMQIATDIICGFPGETDEDFSQTV L+K Y FPQVHISQ
Sbjct: 329 NREYTASEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVELIKDYKFPQVHISQ 388

Query: 378 FYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHLV 437
           FYPRPGTPAA+MKKV S  VK+RSRELTSVFE+F+PY GME + ERIWITE+ATDG+HLV
Sbjct: 389 FYPRPGTPAAKMKKVQSKIVKQRSRELTSVFEAFAPYTGMECREERIWITEVATDGIHLV 448

Query: 438 GHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEG-SVVAKETQKHNHSELQEE 496
           GHTKGY+QVLV  P+SMLGTSA  +ITSVGRWSVFGEVIE  S   +ET+    ++L   
Sbjct: 449 GHTKGYVQVLVTGPESMLGTSAMARITSVGRWSVFGEVIETFSSANRETKSREETKLPCS 508

Query: 497 YRPSQVEEATCCGTDSCGACTCSDAAQQCN 526
              S  E  T C  +SCG      + + CN
Sbjct: 509 SNVSTCETCT-CSAESCGE---ERSGEACN 534



>AT4G36390.1 | chr4:17194746-17197054 REVERSE LENGTH=641
          Length = 640

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/510 (24%), Positives = 215/510 (42%), Gaps = 93/510 (18%)

Query: 46  EARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYA-ITEEPEGADLWLINTCTVK-NP 103
           ++ I     IY +T+GC  N +D E +   +   GY  +  +PE A++  +NTC ++ N 
Sbjct: 122 DSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENA 181

Query: 104 SQSAMTTL---------------ISKCKSANKP-LVVAGCVPQGSRDLKELEGISVIGV- 146
            Q     L                 + KS   P +VV GC+ +  +D K L+   ++ V 
Sbjct: 182 EQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKD-KILDSDKMVDVV 240

Query: 147 ------QQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGAC 200
                 + + R++E V+   KG    L   +T   +   ++ +N     + +  GC   C
Sbjct: 241 CGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMC 300

Query: 201 TYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRD------------ 248
            +C     RG   S  +ES++  V  +   GV+E+ L  ++  +Y  D            
Sbjct: 301 AFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEY 360

Query: 249 ------------IGTNLPNLLNGIAAELPADRSTMLRIGMTNP-----PFILEHLKEIAS 291
                       +G    +LL+ ++ E P      +R   T+P     P  L +L     
Sbjct: 361 SEGFSSRCKVKNMGLRFADLLDRLSVEFPE-----MRFRFTSPHPKDYPDELLYLMRDRH 415

Query: 292 VLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFP 351
            +C+      +H+P QSG+  +L  M R YT   +  +V  +  ++P + I +D I GF 
Sbjct: 416 NICN-----LIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFC 470

Query: 352 GETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAAR--MKKVPSVEVKKRSRELTSVFE 409
           GET+E+  +T++LV+   +   ++  +  R  T A R     VP  EVK+  R LT + +
Sbjct: 471 GETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPE-EVKQ--RRLTELID 527

Query: 410 SFSPYQG--------------MEGKVERIWITEI--ATDGVHLVGHTKG--YIQVLVIAP 451
           +F    G              +EG  +R   TE+   TD  H V       + +  ++  
Sbjct: 528 AFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLDG 587

Query: 452 DSM-----LGTSADVKITSVGRWSVFGEVI 476
           D +     +G   +V+I    R S+FGE +
Sbjct: 588 DDLKRNPGIGDFVEVQIEKSTRASLFGEAL 617



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,648,905
Number of extensions: 521404
Number of successful extensions: 1407
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 2
Length of query: 621
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 516
Effective length of database: 8,227,889
Effective search space: 4245590724
Effective search space used: 4245590724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)