Os04g0433800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent DNA helicase RecQ family protein.
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Os04g0433800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent DNA helicase RecQ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.88 | 0.45 | 6.32 | 0.347 | 1.48 | -0.285 | 0.525 | -2.6 | 0.767 | 20.5 | 24.16 | 1703 | -- | -- |
| 102.7 | 0.472 | 6.39 | -0.514 | 1.44 | -0.366 | 0.67 | -- | 0.569 | 20.5 | 24.3 | 1712 | -- | -- |
| 92.74 | 0.449 | 6.32 | 0.34 | 1.47 | -0.277 | -- | -2.62 | 0.769 | 20.4 | 24.11 | 1720 | -- | -- |
| 102.5 | 0.472 | 6.42 | -0.595 | 1.4 | -0.505 | -- | -- | 0.481 | 20.3 | 24.47 | 2161 | -- | -- |
| 204.13 | 0.665 | 6.32 | 0.224 | -- | -0.518 | -- | -2.16 | 0.62 | -- | 23.2 | 745 | -- | -- |
| 109.32 | 0.49 | 6.39 | -0.39 | 1.47 | -- | 0.556 | -- | 0.648 | 20.5 | -- | -- | -- | -- |
| 110.29 | 0.492 | 6.39 | -0.407 | 1.47 | -- | -- | -- | 0.649 | 20.4 | -- | -- | -- | -- |
| 163.43 | 0.595 | 6.45 | -0.765 | -- | -1.13 | -- | -- | 0.497 | -- | 26.4 | 629 | -- | -- |
| 110.83 | 0.49 | 6.4 | -- | 1.42 | -0.345 | -- | -- | 0.597 | 20.4 | 24.7 | 2139 | -- | -- |
| 231.44 | 0.711 | 6.35 | -0.414 | -- | -- | -- | -- | 0.634 | -- | -- | -- | -- | -- |
| 114.65 | 0.501 | 6.38 | -- | 1.47 | -- | -- | -- | 0.694 | 20.4 | -- | -- | -- | -- |
| 174.53 | 0.615 | 6.39 | -- | -- | -1.09 | -- | -- | 0.448 | -- | 26.4 | 627 | -- | -- |
| 235.96 | 0.717 | 6.34 | -- | -- | -- | -- | -- | 0.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.64 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 3 | 92.74 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 5 | 92.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 48 | 93.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 51 | 93.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 53 | 93.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 55 | 93.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 60 | 93.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 67 | 93.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 68 | 93.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 91 | 93.43 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 125 | 93.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 198 | 93.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 199 | 93.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 16 |
| 210 | 93.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 212 | 93.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 256 | 93.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 257 | 93.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 267 | 93.84 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 324 | 93.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 334 | 93.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 343 | 93.90 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 393 | 93.95 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 445 | 93.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 450 | 93.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 475 | 93.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 578 | 94.05 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 743 | 94.16 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 5 |
| 849 | 94.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 902 | 94.31 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 929 | 94.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |