BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0433800 Os04g0433800|J080072I21
         (166 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10930.1  | chr1:3648032-3654997 REVERSE LENGTH=1189           172   6e-44
AT1G60930.1  | chr1:22431093-22438302 REVERSE LENGTH=1151         165   1e-41

>AT1G10930.1 | chr1:3648032-3654997 REVERSE LENGTH=1189
          Length = 1188

 Score =  172 bits (437), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 104/138 (75%)

Query: 1   IHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGS 60
           +H GE F+ + C KTCDNC      ++KDVT I RQLV+LV  T + +S+ HILEVYRGS
Sbjct: 840 VHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYRGS 899

Query: 61  VNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTN 120
           +NQ VKKHRH+TL  HGAGKHL+K E +RIL +LV E+IL+EDV+KS+ YGSVSS+L+ N
Sbjct: 900 LNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLQVN 959

Query: 121 HKKSGDLLSGKHNVVLKF 138
           + K+  L SG   +V+KF
Sbjct: 960 NAKATILFSGSQTIVMKF 977



>AT1G60930.1 | chr1:22431093-22438302 REVERSE LENGTH=1151
          Length = 1150

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 105/143 (73%)

Query: 1   IHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGS 60
           +H GE F+ + C  TCDNC      ++KDVT IARQLV LV +T + +S+ HI+E+YRGS
Sbjct: 856 VHLGEKFDSTNCKNTCDNCSSSKILIDKDVTVIARQLVALVKLTGERFSSAHIVEIYRGS 915

Query: 61  VNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTN 120
           +NQ+VK++R DTL LHGAGKHL K EA+RIL +LV E+IL E VKKSE YGSVSS+LK N
Sbjct: 916 LNQSVKRNRQDTLHLHGAGKHLTKSEASRILHYLVTEDILAEGVKKSELYGSVSSLLKVN 975

Query: 121 HKKSGDLLSGKHNVVLKFVFFLK 143
             K+  LLSG  ++ ++F   +K
Sbjct: 976 RSKAASLLSGGQSITMRFPSTIK 998



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,595,781
Number of extensions: 135458
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 108 (46.2 bits)