Os04g0433100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0433100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : TRAF-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.03 | 0.544 | 2.88 | 0.0817 | 0.0264 | 7.09 | -0.301 | 14.7 | -0.0589 | 20.2 | 0.8761 | 35 | 6.45 | 9.55 |
| 143.65 | 0.558 | 2.83 | 0.0463 | 0.0201 | 2.77 | -0.268 | -- | -0.0434 | 23.5 | 1.801 | 61 | 6.02 | 10.5 |
| 134.19 | 0.54 | 2.89 | 0.0927 | 0.0305 | 7.48 | -- | 15.7 | -0.0622 | 22.3 | 0.8637 | 32 | 6.37 | 9.63 |
| 143.88 | 0.559 | 2.85 | 0.0578 | 0.0473 | 2.72 | -- | -- | -0.0431 | 1.29 | 1.93 | 61 | 6.07 | 10.5 |
| 133.9 | 0.539 | 2.88 | 0.109 | -- | 8.33 | -- | 17.8 | -0.0431 | -- | 0.8669 | 28 | 7.57 | 9.44 |
| 165 | 0.602 | 2.85 | -0.0454 | 0.00345 | -- | -0.672 | -- | -0.0882 | 18.7 | -- | -- | -- | -- |
| 166.14 | 0.604 | 2.86 | -0.0339 | 0.0148 | -- | -- | -- | -0.0898 | 13.2 | -- | -- | -- | -- |
| 144.01 | 0.559 | 2.84 | 0.0584 | -- | 2.69 | -- | -- | -0.0422 | -- | 1.92 | 61 | 6.05 | 10.5 |
| 143.97 | 0.559 | 2.85 | -- | 0.0473 | 2.69 | -- | -- | -0.0493 | 1.33 | 1.936 | 61 | 6.05 | 10.5 |
| 166.15 | 0.602 | 2.86 | -0.0345 | -- | -- | -- | -- | -0.0901 | -- | -- | -- | -- | -- |
| 166.17 | 0.603 | 2.85 | -- | 0.0154 | -- | -- | -- | -0.086 | 13.3 | -- | -- | -- | -- |
| 144.1 | 0.559 | 2.85 | -- | -- | 2.67 | -- | -- | -0.0488 | -- | 1.93 | 61 | 6.04 | 10.5 |
| 166.18 | 0.602 | 2.85 | -- | -- | -- | -- | -- | -0.0863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 9 |
| 7 | 136.56 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 9 |
| 8 | 137.52 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 11 | 139.48 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 26 | 142.74 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 30 | 142.77 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 5 |
| 33 | 142.77 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 59 | 142.82 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 62 | 142.82 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 3 |
| 70 | 142.82 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 88 | 142.82 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 91 | 142.82 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 99 | 142.82 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 136 | 142.90 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 163 | 142.97 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 1 |
| 200 | 142.97 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 279 | 146.50 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 282 | 146.70 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 288 | 146.71 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 314 | 147.12 | wind | 3.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 334 | 148.24 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 360 | 150.10 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 364 | 150.23 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 377 | 150.65 | wind | 3.0 | 10 | < th | dose independent | rect. | 19 | 2 |
| 405 | 151.75 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 2 |
| 417 | 152.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 419 | 152.35 | wind | 3.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 461 | 152.82 | wind | 3.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 541 | 154.12 | radiation | 1.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 598 | 154.78 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 619 | 154.89 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 13 |
| 623 | 154.89 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 654 | 155.05 | humidity | 90.0 | 30 | > th | dose independent | rect. | 15 | 5 |
| 674 | 155.17 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 684 | 155.22 | wind | 3.0 | 10 | > th | dose independent | rect. | 18 | 15 |
| 696 | 155.38 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 712 | 155.51 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 728 | 155.61 | wind | 3.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 798 | 156.04 | wind | 3.0 | 10 | > th | dose dependent | rect. | 18 | 17 |
| 823 | 156.15 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 858 | 156.27 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 877 | 156.34 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 891 | 156.40 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 898 | 156.42 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 908 | 156.45 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 12 | 8 |