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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0432900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0175) R2 : 0.000308
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0138 (0.0369) R2dN8 : 0.000398 R2N8 : 0.000308
σ : 0.33
deviance : 49.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.47 0.327 2.52 -0.691 0.104 25.4 -0.116 53.8 0.0152 6.95 15 719 -- --
49.24 0.329 2.85 -0.00151 0.104 -0.0639 -0.142 -- 0.0118 7.28 15 719 -- --
48.5 0.324 2.52 -0.693 0.104 25.5 -- 53.8 0.0156 6.93 15.01 718 -- --
48.84 0.325 2.85 0.0248 0.105 -0.314 -- -- 0.0198 7.03 16.8 101 -- --
49.07 0.326 2.52 -0.695 -- 25.5 -- 53.9 0.0177 -- 15.01 726 -- --
49.25 0.329 2.85 -0.00416 0.104 -- -0.138 -- 0.0112 7.22 -- -- -- --
49.3 0.329 2.85 -0.00723 0.104 -- -- -- 0.0114 7.05 -- -- -- --
49.39 0.327 2.85 0.0287 -- -0.304 -- -- 0.0217 -- 16.9 100 -- --
48.85 0.326 2.85 -- 0.103 -0.298 -- -- 0.0166 7 16.78 101 -- --
49.87 0.33 2.86 -0.00518 -- -- -- -- 0.0132 -- -- -- -- --
49.3 0.328 2.85 -- 0.104 -- -- -- 0.0122 7.06 -- -- -- --
49.41 0.327 2.86 -- -- -0.3 -- -- 0.0196 -- 16.9 97 -- --
49.87 0.33 2.86 -- -- -- -- -- 0.0138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.21 humidity 80.0 10 < th dose independent rect. 5 1
7 46.21 humidity 80.0 10 < th dose dependent rect. 5 1
28 46.60 atmosphere 995.0 4320 > th dose independent rect. 12 4
33 46.69 wind 3.0 10 > th dose dependent rect. 6 1
36 46.75 temperature 25.0 10 > th dose dependent rect. 11 1
39 46.82 radiation 1.0 4320 < th dose dependent rect. 23 1
40 46.84 atmosphere 995.0 4320 > th dose independent rect. 5 9
41 46.85 atmosphere 995.0 4320 > th dose independent rect. 12 1
43 46.86 atmosphere 995.0 4320 > th dose independent rect. 7 7
46 46.87 atmosphere 995.0 4320 < th dose dependent rect. 14 1
67 46.91 atmosphere 995.0 4320 < th dose independent rect. 14 1
78 46.94 atmosphere 995.0 4320 > th dose independent rect. 2 12
80 46.97 atmosphere 995.0 4320 > th dose independent rect. 15 1
93 46.99 atmosphere 995.0 4320 > th dose independent rect. 7 9
108 47.02 wind 3.0 10 > th dose independent rect. 5 2
206 47.27 atmosphere 1000.0 10 < th dose independent rect. 11 1
222 47.31 temperature 25.0 10 > th dose independent rect. 11 1
257 47.41 wind 1.0 10 > th dose independent rect. 12 23
298 47.48 humidity 90.0 4320 > th dose independent rect. 4 2
314 47.51 atmosphere 995.0 4320 > th dose independent rect. 19 19
327 47.56 atmosphere 1005.0 90 < th dose dependent rect. 10 1
334 47.62 humidity 80.0 4320 > th dose dependent rect. 4 1
345 47.67 wind 1.0 10 < th dose dependent rect. 22 2
350 47.69 wind 1.0 10 > th dose independent rect. 1 10
354 47.70 humidity 90.0 4320 < th dose independent rect. 4 2
357 47.71 humidity 50.0 10 > th dose independent rect. 11 1
365 47.72 atmosphere 1015.0 30 < th dose dependent rect. 11 1
392 47.76 wind 7.0 4320 > th dose independent rect. 6 1
396 47.76 humidity 90.0 14400 < th dose dependent rect. 4 1
397 47.76 humidity 50.0 4320 > th dose dependent rect. 4 2
404 47.77 wind 1.0 30 > th dose independent rect. 11 1
406 47.77 wind 7.0 4320 > th dose dependent rect. 6 1
414 47.79 precipitation 0.1 4320 > th dose dependent rect. 20 1
418 47.80 humidity 80.0 14400 < th dose dependent rect. 22 1
421 47.81 radiation 1.0 10 > th dose independent rect. 11 1
428 47.81 radiation 1.0 4320 < th dose dependent rect. 23 4
438 47.82 temperature 10.0 1440 > th dose independent rect. 12 1
443 47.82 wind 9.0 30 < th dose independent rect. 12 23
444 47.82 temperature 10.0 1440 > th dose independent rect. 13 23
448 47.82 radiation 1.0 4320 < th dose dependent rect. 19 8
452 47.83 temperature 10.0 30 > th dose independent rect. 11 1
454 47.83 atmosphere 995.0 30 > th dose independent rect. 11 1
455 47.83 atmosphere 1015.0 30 < th dose independent rect. 11 1
456 47.83 precipitation 0.1 30 < th dose independent rect. 11 1
458 47.83 temperature 10.0 30 > th dose independent rect. 12 23
459 47.83 precipitation 0.1 30 < th dose dependent rect. 11 1
464 47.84 wind 7.0 4320 < th dose independent rect. 5 2
465 47.84 wind 1.0 10 < th dose independent rect. 22 2
488 47.85 humidity 80.0 14400 > th dose independent rect. 22 8
494 47.85 humidity 80.0 14400 < th dose dependent rect. 21 9
495 47.86 wind 9.0 30 < th dose independent rect. 11 1
499 47.86 humidity 80.0 14400 < th dose independent rect. 21 9
504 47.87 humidity 80.0 14400 < th dose independent rect. 23 1
513 47.88 humidity 80.0 14400 < th dose independent rect. 22 3
518 47.88 humidity 80.0 14400 < th dose independent rect. 22 7
521 47.88 atmosphere 995.0 30 > th dose independent rect. 12 23
548 47.90 humidity 80.0 1440 > th dose independent rect. 22 1
552 47.90 radiation 30.0 30 < th dose independent rect. 11 1
554 47.90 humidity 80.0 14400 > th dose independent rect. 23 2
565 47.90 wind 1.0 10 > th dose dependent rect. 11 1
566 47.90 humidity 80.0 270 < th dose dependent rect. 2 1
604 47.92 humidity 90.0 720 > th dose independent rect. 3 3
632 47.94 wind 9.0 14400 > th dose independent rect. 12 1
663 47.95 precipitation 0.1 30 < th dose independent rect. 12 23
668 47.95 precipitation 0.1 30 < th dose dependent rect. 12 23
682 47.96 radiation 1.0 4320 < th dose dependent rect. 1 1
711 47.98 humidity 50.0 30 > th dose independent rect. 12 23
712 47.98 wind 9.0 14400 > th dose dependent rect. 12 1
713 47.98 radiation 30.0 10 < th dose dependent rect. 12 1
737 48.00 wind 1.0 14400 > th dose independent rect. 9 3
762 48.02 humidity 80.0 30 < th dose independent rect. 11 1
791 48.03 wind 1.0 14400 < th dose independent rect. 9 3
822 48.05 humidity 80.0 1440 < th dose independent rect. 22 1
839 48.06 temperature 25.0 270 > th dose independent rect. 5 1
855 48.06 wind 3.0 14400 < th dose dependent rect. 11 1
863 48.07 wind 1.0 10 < th dose independent rect. 4 1
889 48.08 temperature 25.0 270 > th dose dependent rect. 5 1
899 48.09 wind 9.0 14400 < th dose independent rect. 12 2
904 48.09 atmosphere 1015.0 30 < th dose independent rect. 11 14
915 48.09 temperature 10.0 30 > th dose dependent rect. 12 23
934 48.10 atmosphere 1015.0 30 < th dose independent rect. 12 23
946 48.11 wind 7.0 4320 > th dose independent rect. 18 2
949 48.11 wind 9.0 14400 < th dose independent rect. 12 4
962 48.12 temperature 15.0 1440 > th dose independent rect. 4 9
966 48.12 humidity 90.0 720 > th dose dependent rect. 5 1
969 48.12 wind 3.0 14400 < th dose dependent rect. 10 3
974 48.12 temperature 10.0 30 > th dose dependent rect. 11 14
975 48.13 wind 9.0 14400 < th dose independent rect. 15 1
997 48.14 precipitation 0.1 10 < th dose independent rect. 11 14