Os04g0431800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0431800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.72 | 0.174 | 11.1 | -0.501 | 0.611 | -0.446 | 0.0653 | -0.616 | -0.274 | 20.9 | 26.24 | 35 | -- | -- |
| 14.35 | 0.176 | 11.1 | -0.602 | 0.597 | -0.497 | -0.0591 | -- | -0.274 | 21.1 | 42.47 | 40 | -- | -- |
| 13.74 | 0.173 | 11.1 | -0.501 | 0.611 | -0.445 | -- | -0.611 | -0.273 | 20.9 | 26.25 | 35 | -- | -- |
| 14.36 | 0.176 | 11.1 | -0.6 | 0.598 | -0.499 | -- | -- | -0.274 | 21.1 | 50.06 | 37 | -- | -- |
| 26.06 | 0.238 | 11.1 | -0.608 | -- | -0.801 | -- | -0.469 | -0.306 | -- | 54.84 | 604 | -- | -- |
| 16.72 | 0.192 | 11.1 | -0.503 | 0.597 | -- | -0.0706 | -- | -0.205 | 20.2 | -- | -- | -- | -- |
| 16.73 | 0.192 | 11.1 | -0.501 | 0.597 | -- | -- | -- | -0.205 | 20.2 | -- | -- | -- | -- |
| 26.22 | 0.238 | 11.1 | -0.697 | -- | -0.811 | -- | -- | -0.331 | -- | 45.68 | 607 | -- | -- |
| 22.9 | 0.224 | 11.1 | -- | 0.6 | -0.208 | -- | -- | -0.174 | 20.5 | 50.06 | 37 | -- | -- |
| 36.38 | 0.282 | 11.1 | -0.506 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 23.36 | 0.226 | 11.1 | -- | 0.6 | -- | -- | -- | -0.149 | 20.1 | -- | -- | -- | -- |
| 37.9 | 0.287 | 11.1 | -- | -- | -0.558 | -- | -- | -0.223 | -- | 56.97 | 577 | -- | -- |
| 43.14 | 0.307 | 11.1 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 9 | 12.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 11 | 12.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 111 | 13.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 116 | 13.09 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 194 | 13.25 | temperature | 20.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 201 | 13.25 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 273 | 13.38 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 303 | 13.42 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 327 | 13.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 403 | 13.58 | temperature | 30.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 408 | 13.58 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 441 | 13.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 455 | 13.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 480 | 13.71 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 535 | 13.77 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 536 | 13.78 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 550 | 13.79 | temperature | 25.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 576 | 13.82 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 587 | 13.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 602 | 13.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 606 | 13.86 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 12 |
| 620 | 13.87 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 638 | 13.88 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 645 | 13.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 657 | 13.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 670 | 13.90 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 673 | 13.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 674 | 13.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 678 | 13.91 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 679 | 13.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 696 | 13.91 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 699 | 13.92 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 719 | 13.92 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 721 | 13.92 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 724 | 13.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 743 | 13.93 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 745 | 13.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 746 | 13.94 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 9 |
| 756 | 13.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 773 | 13.94 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 775 | 13.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 776 | 13.95 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 785 | 13.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 786 | 13.95 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 800 | 13.96 | temperature | 25.0 | 720 | < th | dose independent | sin | 18 | NA |
| 801 | 13.96 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 804 | 13.96 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 822 | 13.97 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 823 | 13.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 10 |
| 855 | 13.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 871 | 13.98 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 891 | 13.99 | temperature | 25.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 995 | 14.03 | temperature | 25.0 | 720 | > th | dose independent | sin | 18 | NA |