BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0431800 Os04g0431800|AK068094
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17010.1  | chr4:9576442-9577627 FORWARD LENGTH=161            119   6e-28

>AT4G17010.1 | chr4:9576442-9577627 FORWARD LENGTH=161
          Length = 160

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%)

Query: 1   MDKLVQFGRKAWFVVRVLSGYEERRIRAHRLQMQQRIARAQAKKEELRKQPEQIILSEVR 60
           M+KL+++GRKA F VRVLSGYEERRIR++RLQ+++RI +A  +K E+ + PEQI+LSEVR
Sbjct: 1   MNKLLEYGRKAMFYVRVLSGYEERRIRSYRLQLEKRIQQANQRKVEINRLPEQIVLSEVR 60

Query: 61  XXXXXXXXXXXXXXXXETAIDEYFKPIDKNAKIIMDMQLEKEEKQIKEMTKVMQDQIAMQ 120
                           E  I++YFKPIDK+A  IM++QLE E+K +  M    Q +   +
Sbjct: 61  RMVEEMQNLNKQIENTEAQIEDYFKPIDKHASTIMEIQLEGEKKTMGTMMNATQQEAIRK 120

Query: 121 REIASKRAQATAIESKDAQTQTSDKI 146
            E A K A+A    +        DKI
Sbjct: 121 IEEAEKLARARGNANVTTDANMGDKI 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,495,953
Number of extensions: 71149
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)