Os04g0418500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os04g0418500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.13 | 0.598 | 10.3 | 0.653 | 0.536 | 1.74 | 0.466 | -3.06 | -0.133 | 23.6 | 26.1 | 459 | -- | -- |
| 164.18 | 0.597 | 10.2 | 1 | 0.532 | 1.48 | 0.477 | -- | -0.0545 | 23.6 | 26.3 | 459 | -- | -- |
| 162.79 | 0.594 | 10.3 | 0.651 | 0.545 | 1.77 | -- | -3.36 | -0.101 | 23.3 | 26.62 | 460 | -- | -- |
| 164.82 | 0.598 | 10.2 | 1.01 | 0.536 | 1.41 | -- | -- | -0.0386 | 23 | 26.35 | 468 | -- | -- |
| 175.02 | 0.616 | 10.3 | 0.609 | -- | 1.8 | -- | -2.38 | -0.128 | -- | 26.06 | 663 | -- | -- |
| 199.73 | 0.663 | 10.2 | 1.25 | 0.9 | -- | 0.567 | -- | -0.000857 | 20.4 | -- | -- | -- | -- |
| 200.74 | 0.663 | 10.2 | 1.23 | 0.901 | -- | -- | -- | -0.000328 | 20.3 | -- | -- | -- | -- |
| 176.11 | 0.618 | 10.2 | 0.93 | -- | 1.59 | -- | -- | -0.0701 | -- | 25.8 | 663 | -- | -- |
| 190.3 | 0.642 | 10.3 | -- | 0.458 | 1.56 | -- | -- | -0.189 | 23.3 | 25.8 | 517 | -- | -- |
| 245.8 | 0.733 | 10.2 | 1.23 | -- | -- | -- | -- | -0.00988 | -- | -- | -- | -- | -- |
| 240.69 | 0.726 | 10.3 | -- | 0.895 | -- | -- | -- | -0.137 | 20.4 | -- | -- | -- | -- |
| 197.78 | 0.655 | 10.3 | -- | -- | 1.73 | -- | -- | -0.221 | -- | 25.2 | 685 | -- | -- |
| 285.44 | 0.789 | 10.2 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.15 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 16 | 163.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 18 | 163.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 26 | 163.82 | temperature | 25 | 270 | > th | dose dependent | sin | 19 | NA |
| 30 | 164.07 | humidity | 70 | 270 | < th | dose independent | sin | 18 | NA |
| 47 | 164.58 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 21 |
| 54 | 164.69 | humidity | 70 | 270 | > th | dose independent | sin | 18 | NA |
| 58 | 164.79 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 9 |
| 96 | 165.55 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 13 |
| 100 | 165.59 | humidity | 70 | 30 | > th | dose independent | sin | 14 | NA |
| 102 | 165.66 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 132 | 166.29 | temperature | 25 | 720 | > th | dose dependent | sin | 1 | NA |
| 134 | 166.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 11 |
| 155 | 166.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 157 | 166.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 181 | 166.76 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 12 |
| 221 | 167.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 238 | 167.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 241 | 167.20 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 290 | 167.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 300 | 167.42 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 20 |
| 317 | 167.62 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 16 |
| 332 | 167.77 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 8 |
| 351 | 167.85 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 360 | 167.91 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 17 |
| 364 | 167.96 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 11 |
| 365 | 167.96 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 366 | 167.96 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 390 | 168.05 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 19 |
| 400 | 168.12 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 7 |
| 422 | 168.21 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 456 | 168.35 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 14 |
| 460 | 168.37 | temperature | 30 | 270 | > th | dose independent | sin | 19 | NA |
| 473 | 168.49 | temperature | 30 | 270 | < th | dose independent | sin | 16 | NA |
| 495 | 168.67 | temperature | 30 | 720 | < th | dose independent | sin | 20 | NA |
| 496 | 168.67 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 534 | 168.82 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 564 | 168.94 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 23 |
| 608 | 169.00 | temperature | 30 | 720 | > th | dose independent | sin | 22 | NA |
| 627 | 169.04 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 5 |
| 643 | 169.05 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 22 |
| 645 | 169.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 680 | 169.11 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 711 | 169.17 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 716 | 169.19 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 731 | 169.29 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 751 | 169.38 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 859 | 169.43 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 10 |
| 860 | 169.43 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 936 | 169.61 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 983 | 169.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |