Os04g0404800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0404800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.93 | 0.474 | 12.3 | -0.109 | 1 | -5.12 | 1.42 | -0.944 | 0.0114 | 11.6 | 7.029 | 316 | 14 | -- |
| 100.61 | 0.467 | 12.3 | -0.108 | 1.03 | -5.09 | 1.77 | -- | -0.00475 | 11.4 | 6.969 | 381 | 14.7 | -- |
| 110.11 | 0.489 | 12.3 | -0.141 | 0.82 | -4.93 | -- | -1.58 | -0.0108 | 10.5 | 6.852 | 324 | 13.8 | -- |
| 107.94 | 0.484 | 12.3 | 0.0809 | 1.7 | -5.39 | -- | -- | 0.0705 | 12.2 | 6.763 | 496 | 16.6 | -- |
| 109.74 | 0.488 | 12.4 | -0.101 | -- | -5.39 | -- | -1.71 | 0.00354 | -- | 3.936 | 478 | 14.6 | -- |
| 192.11 | 0.65 | 12.3 | -0.553 | 4.35 | -- | 2.4 | -- | -0.226 | 7.22 | -- | -- | -- | -- |
| 207.41 | 0.674 | 12.3 | -0.504 | 4.36 | -- | -- | -- | -0.232 | 7.18 | -- | -- | -- | -- |
| 114.99 | 0.499 | 12.3 | 0.0286 | -- | -5.46 | -- | -- | 0.0417 | -- | 4.825 | 476 | 14.6 | -- |
| 108.1 | 0.484 | 12.3 | -- | 1.73 | -5.28 | -- | -- | 0.0604 | 12 | 6.935 | 494 | 16.7 | -- |
| 1212.94 | 1.63 | 12.4 | -0.424 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 214.12 | 0.684 | 12.3 | -- | 4.36 | -- | -- | -- | -0.175 | 7.19 | -- | -- | -- | -- |
| 114.88 | 0.499 | 12.3 | -- | -- | -5.46 | -- | -- | 0.0414 | -- | 4.974 | 436 | 14.2 | -- |
| 1217.69 | 1.63 | 12.4 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 12 | 97.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 49 | 103.17 | temperature | 10 | 270 | > th | dose dependent | sin | 20 | NA |
| 53 | 103.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 61 | 104.78 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 111 | 107.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 113 | 107.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 118 | 107.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 125 | 108.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 157 | 109.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 211 | 110.92 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 15 |
| 256 | 112.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 292 | 113.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 363 | 114.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 365 | 114.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 410 | 115.42 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 422 | 115.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 427 | 115.77 | temperature | 30 | 270 | < th | dose independent | sin | 17 | NA |
| 461 | 116.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 637 | 118.77 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 22 |
| 665 | 118.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 693 | 119.40 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 718 | 119.64 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 20 |
| 727 | 119.68 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 755 | 119.90 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 829 | 120.57 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |
| 833 | 120.60 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 838 | 120.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 876 | 121.02 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 908 | 121.31 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 937 | 121.54 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 4 |
| 941 | 121.57 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 6 |
| 957 | 121.59 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 2 |