Os04g0402100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calnexin (Fragment).
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Os04g0402100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calnexin (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.19 | 0.491 | 12.7 | 0.582 | 0.351 | 0.69 | -0.601 | -2.27 | 0.401 | 17.3 | 19.6 | 2778 | -- | -- |
| 114.59 | 0.499 | 12.7 | 0.456 | 0.348 | 1.55 | -0.451 | -- | 0.377 | 17.4 | 18.4 | 9512 | -- | -- |
| 109.03 | 0.486 | 12.7 | 0.694 | 0.307 | 0.731 | -- | -2.13 | 0.444 | 17.1 | 19.2 | 2106 | -- | -- |
| 114.56 | 0.498 | 12.7 | 0.546 | 0.321 | 1.51 | -- | -- | 0.401 | 17.3 | 18.55 | 7956 | -- | -- |
| 113.99 | 0.497 | 12.7 | 0.696 | -- | 0.749 | -- | -2.11 | 0.439 | -- | 19.2 | 2057 | -- | -- |
| 139.75 | 0.554 | 12.6 | 1.5 | 0.314 | -- | -0.307 | -- | 0.731 | 17.6 | -- | -- | -- | -- |
| 139.98 | 0.554 | 12.6 | 1.5 | 0.312 | -- | -- | -- | 0.73 | 17.5 | -- | -- | -- | -- |
| 119.81 | 0.51 | 12.7 | 0.563 | -- | 1.55 | -- | -- | 0.4 | -- | 18.4 | 7842 | -- | -- |
| 113.94 | 0.497 | 12.7 | -- | 0.32 | 1.72 | -- | -- | 0.272 | 17 | 17.6 | 22489 | -- | -- |
| 145.04 | 0.563 | 12.6 | 1.49 | -- | -- | -- | -- | 0.723 | -- | -- | -- | -- | -- |
| 199.16 | 0.66 | 12.6 | -- | 0.288 | -- | -- | -- | 0.563 | 17.7 | -- | -- | -- | -- |
| 119.3 | 0.509 | 12.7 | -- | -- | 1.71 | -- | -- | 0.269 | -- | 17.5 | 22419 | -- | -- |
| 203.46 | 0.666 | 12.6 | -- | -- | -- | -- | -- | 0.558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 104.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 3 | 104.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 4 | 104.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 9 | 104.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 14 | 104.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 18 | 104.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 43 | 105.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 46 | 105.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 79 | 105.94 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 123 | 106.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 165 | 106.89 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 173 | 106.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 177 | 107.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 183 | 107.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 188 | 107.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 197 | 107.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 213 | 107.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 254 | 107.54 | humidity | 90 | 14400 | < th | dose independent | sin | 4 | NA |
| 258 | 107.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 312 | 107.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 356 | 108.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 373 | 108.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 424 | 108.44 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 426 | 108.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 434 | 108.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 441 | 108.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 447 | 108.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 461 | 108.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 607 | 109.09 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 709 | 109.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 794 | 109.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 796 | 109.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 803 | 109.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 823 | 109.89 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 851 | 109.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 872 | 110.02 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 873 | 110.02 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 23 |