Os04g0401400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sigma factor, regions 3 and 4 domain containing protein.
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Os04g0401400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sigma factor, regions 3 and 4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.2 | 0.333 | 3.14 | -0.469 | 0.178 | 0.414 | 0.0889 | -4.19 | -0.0195 | 10.1 | 30 | 10 | -- | -- |
| 54.76 | 0.345 | 3.11 | -0.116 | 0.213 | -0.0888 | 0.0407 | -- | 0.0105 | 10.6 | 32.1 | 52 | -- | -- |
| 51.23 | 0.333 | 3.14 | -0.463 | 0.177 | 0.413 | -- | -4.16 | -0.0189 | 10.1 | 30.02 | 10 | -- | -- |
| 54.68 | 0.347 | 3.11 | -0.137 | 0.197 | 0.0783 | -- | -- | 0.0109 | 10.1 | 30.02 | 10 | -- | -- |
| 53.1 | 0.339 | 3.15 | -0.49 | -- | 0.46 | -- | -4.45 | -0.0203 | -- | 30.04 | 10 | -- | -- |
| 54.9 | 0.347 | 3.11 | -0.129 | 0.205 | -- | 0.0135 | -- | 0.0102 | 10.5 | -- | -- | -- | -- |
| 54.9 | 0.347 | 3.11 | -0.129 | 0.205 | -- | -- | -- | 0.0102 | 10.5 | -- | -- | -- | -- |
| 56.5 | 0.352 | 3.11 | -0.156 | -- | 0.118 | -- | -- | 0.000852 | -- | 29 | 11 | -- | -- |
| 55.17 | 0.348 | 3.1 | -- | 0.199 | 0.0678 | -- | -- | 0.0259 | 10.2 | 30.02 | 10 | -- | -- |
| 57.47 | 0.354 | 3.11 | -0.132 | -- | -- | -- | -- | 0.0094 | -- | -- | -- | -- | -- |
| 55.34 | 0.348 | 3.1 | -- | 0.205 | -- | -- | -- | 0.0246 | 10.5 | -- | -- | -- | -- |
| 57.13 | 0.353 | 3.11 | -- | -- | 0.106 | -- | -- | 0.0188 | -- | 29 | 12 | -- | -- |
| 57.93 | 0.355 | 3.11 | -- | -- | -- | -- | -- | 0.0241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.90 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 1 |
| 3 | 50.28 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 2 |
| 4 | 50.28 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 9 | 50.51 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 19 |
| 10 | 50.52 | humidity | 90 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 28 | 50.64 | temperature | 30 | 10 | > th | dose independent | sin | 5 | NA |
| 84 | 50.86 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 23 |
| 120 | 50.91 | humidity | 90 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 128 | 50.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 257 | 51.17 | temperature | 30 | 10 | < th | dose independent | sin | 2 | NA |
| 279 | 51.20 | temperature | 30 | 10 | > th | dose independent | no | NA | NA |
| 434 | 51.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 466 | 51.51 | temperature | 30 | 10 | < th | dose independent | no | NA | NA |
| 471 | 51.51 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |
| 515 | 51.62 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 23 |
| 517 | 51.62 | humidity | 80 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 520 | 51.64 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 526 | 51.66 | humidity | 80 | 30 | < th | dose dependent | rect. | 24 | 2 |
| 529 | 51.67 | humidity | 80 | 30 | < th | dose independent | rect. | 24 | 2 |
| 546 | 51.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 572 | 51.71 | temperature | 30 | 10 | < th | dose independent | rect. | 21 | 23 |
| 578 | 51.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 612 | 51.77 | temperature | 30 | 10 | < th | dose independent | rect. | 15 | 23 |
| 619 | 51.79 | temperature | 30 | 10 | < th | dose independent | rect. | 13 | 23 |
| 620 | 51.79 | humidity | 80 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 624 | 51.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 636 | 51.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 659 | 51.89 | humidity | 60 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 671 | 51.91 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 673 | 51.93 | radiation | 10 | 90 | < th | dose independent | rect. | 10 | 1 |
| 736 | 51.98 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 740 | 51.99 | humidity | 90 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 804 | 52.05 | wind | 1 | 30 | < th | dose independent | rect. | 9 | 3 |
| 920 | 52.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 926 | 52.14 | humidity | 70 | 720 | > th | dose dependent | sin | 8 | NA |
| 934 | 52.15 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 941 | 52.16 | humidity | 60 | 14400 | < th | dose dependent | sin | 7 | NA |
| 953 | 52.17 | wind | 1 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 966 | 52.18 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 970 | 52.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 971 | 52.19 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 972 | 52.19 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 986 | 52.20 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 8 |