BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0401400 Os04g0401400|AK070418
         (261 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41980.1  | chr5:16793765-16794889 FORWARD LENGTH=375          181   2e-46
AT1G43722.1  | chr1:16496403-16497377 FORWARD LENGTH=325          157   8e-39
AT5G28730.1  | chr5:10779003-10780218 FORWARD LENGTH=297          109   1e-24
AT5G28950.1  | chr5:10992505-10993435 FORWARD LENGTH=149          102   1e-22
AT5G35695.1  | chr5:13869120-13869941 FORWARD LENGTH=212           81   7e-16
AT3G55350.1  | chr3:20518518-20520690 FORWARD LENGTH=407           53   1e-07

>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
          Length = 374

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 131/232 (56%), Gaps = 12/232 (5%)

Query: 20  DTTCIDMLRLRRGSFFRFCKLFRDCGLLEDTIHMCIEEQVAMFLHTVGHNLRNRLVRTNY 79
           +  C +  R+ +  F++ C L +  GLL  T  + IE Q+A+FL  +GHNLR R V+  +
Sbjct: 39  NEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELF 98

Query: 80  DRSGETVSRYFNKVLHAIGELRDELIRPPSLDTPTKIAGNPRWDPYFKDCIGAIDGTHIR 139
             SGET+SR+FN VL+A+  +  +  +P S     +       DPYFKDC+G +D  HI 
Sbjct: 99  CYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLE-----NDDPYFKDCVGVVDSFHIP 153

Query: 140 ASIRKNVESSFRGRKSHATQNVMAAVDFDLRFTYVLAGWEGTTHDAVVLRDALERENGLH 199
             +  + +  FR      TQNV+AA  FDLRF YVLAGWEG+  D  VL  AL R N L 
Sbjct: 154 VMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQ 213

Query: 200 VPQGKFYLVDAGYGAKQGFLPPFRAVRYHLKEWGNNPVQNEKELFNLRHSSL 251
           VPQGK+Y+VD  Y    GF+ P+  V  + +E         KE+FN RH  L
Sbjct: 214 VPQGKYYIVDNKYPNLPGFIAPYHGVSTNSREEA-------KEMFNERHKLL 258



>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
          Length = 324

 Score =  157 bits (396), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 140/252 (55%), Gaps = 15/252 (5%)

Query: 16  IWR----NDTTCIDMLRLRRGSFFRFCKLFRDCGLLEDTIHMCIEEQVAMFLHTVGHNLR 71
           IWR    +   C+ +LR+    F   C + +    L+ T+++ IEE VAMFL   GHN  
Sbjct: 55  IWRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEV 114

Query: 72  NRLVRTNYDRSGETVSRYFNKVLHAIGELRDELIRPPSLD----TPTKIAGNPRWDPYFK 127
            R V   + R+ ETV R F +VL A   L  + IR P+       P ++  + R+ PYF 
Sbjct: 115 YRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFS 174

Query: 128 DCIGAIDGTHIRASIRKNVESSFRGRKSHATQNVMAAVDFDLRFTYVLAGWEGTTHDAVV 187
             +GA+DGTH+   ++ +++  +  R  +A+ N+MA  D  + FTY+  G  G+ +D  V
Sbjct: 175 GFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAV 234

Query: 188 LRDALERENGLHVPQG-KFYLVDAGYGAKQGFLPPFRA-----VRYHLKEWGNNP-VQNE 240
           L+ A + ++   +P   K+YLVD+GY  KQG L P+R+     VRYH+ ++   P  +N+
Sbjct: 235 LQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPRPRNK 294

Query: 241 KELFNLRHSSLR 252
            ELFN  H+SLR
Sbjct: 295 HELFNQCHTSLR 306



>AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297
          Length = 296

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 29/219 (13%)

Query: 10  EYLETKIWRNDTTCIDMLRLRRGSFFRFCKLFRDCGLLEDTIHMCIEEQVAMFLHTVGHN 69
           E +  +I+ N+ +C  ++R+   +F + C++      L+ + ++ ++E VA+FL     N
Sbjct: 11  ECIAHQIYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASN 70

Query: 70  LRNRLVRTNYDRSGETVSRYFNKVLHAIGELRDELIRPPSLD----TPTKIAGNPRWDPY 125
              R +   +  + ET+ R F+ VL A+  L  E IRP  ++       ++  + R+ P+
Sbjct: 71  DTQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEELRAISNRLQDDTRYWPF 130

Query: 126 FKDCIGAIDGTHIRASIRKNVESSFRGRKSHATQNVMAAVDFDLRFTYVLAGWEGTTHDA 185
             D +G                         A+ NV+A  D D+ FTY   G  G+THDA
Sbjct: 131 LMDLLGI------------------------ASFNVLAICDLDMLFTYCFVGMAGSTHDA 166

Query: 186 VVLRDALERENGLHV-PQGKFYLVDAGYGAKQGFLPPFR 223
            VL  A+  +   HV P  K+YLVD+GY  K+G+L P+R
Sbjct: 167 RVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLAPYR 205



>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
          Length = 148

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 108 PSLDTPTKIAGNPRWDPYFKDCIGAIDGTHIRASIRKNVESSFRGRKSHATQNVMAAVDF 167
           P +  P KI  + R  PYFKDC+GAID THI A + +    SFR RK   +QN++AA +F
Sbjct: 4   PEIAVPRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNF 63

Query: 168 DLRFTYVLAGWEGTTHDAVVLRDALER-ENGLHVP 201
           D+ F YVL+GWEG+ HD+ VL DAL R  N L VP
Sbjct: 64  DVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98



>AT5G35695.1 | chr5:13869120-13869941 FORWARD LENGTH=212
          Length = 211

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 51/84 (60%), Gaps = 12/84 (14%)

Query: 171 FTYVLAGWEGTTHDAVVLRDALERENGLHVPQGKFYLVDAGYGAKQGFLPPFRAVRYHLK 230
           F YVL+GWEG+ HD+ VL DAL           KFYLVD G+  +  FL PFR VRYHL+
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALR----------KFYLVDCGFANRLNFLAPFRGVRYHLQ 74

Query: 231 EWGNNPVQNEK--ELFNLRHSSLR 252
           E+       E   ELFNLRH SLR
Sbjct: 75  EFAGQRRDPETPHELFNLRHVSLR 98



>AT3G55350.1 | chr3:20518518-20520690 FORWARD LENGTH=407
          Length = 406

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 42/220 (19%)

Query: 53  MCIEEQVAMFLHTVGHNLRNRLVRTNYDRSGETVSRYFNKVLHAIGE-LRDELIRPPSLD 111
           + + ++VA+ L  +G      ++   +  +  TVS+   + + ++ E     L  P  LD
Sbjct: 109 LSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAIHHLSWPSKLD 168

Query: 112 TPT----KIAGNPRWDPYFKDCIGAIDGTHIRASIRKNVESSFR----GRKSHATQNVMA 163
                  KI+G P       +C GAID THI  ++   VE S +    G K+  +  + A
Sbjct: 169 EIKSKFEKISGLP-------NCCGAIDITHIVMNL-PAVEPSNKVWLDGEKNF-SMTLQA 219

Query: 164 AVDFDLRFTYVLAGWEGTTHDAVVLRDA--------LERENGLHVPQG------KFYLVD 209
            VD D+RF  V+AGW G+ +D VVL+++         +R NG  +P        ++ + D
Sbjct: 220 VVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGD 279

Query: 210 AGYGAKQGFLPPFRAVRYHLKEWGNNPVQNEKELFNLRHS 249
           +G+      L P++            P    +  FN RHS
Sbjct: 280 SGFPLLPWLLTPYQG----------KPTSLPQTEFNKRHS 309



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,953,046
Number of extensions: 249191
Number of successful extensions: 574
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 7
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)