Os04g0401300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os04g0401300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.09 | 0.27 | 10 | -0.146 | 0.488 | 0.229 | -0.465 | -0.286 | -0.00216 | 9.76 | 20.7 | 23 | -- | -- |
| 33.4 | 0.269 | 10 | -0.0944 | 0.489 | 0.252 | -0.548 | -- | 0.0121 | 9.78 | 20.6 | 73 | -- | -- |
| 33.82 | 0.271 | 10 | -0.157 | 0.488 | 0.219 | -- | -0.376 | -0.00313 | 9.78 | 20.8 | 37 | -- | -- |
| 34.54 | 0.274 | 10 | -0.121 | 0.492 | 0.261 | -- | -- | 0.00782 | 9.7 | 20.57 | 73 | -- | -- |
| 46.6 | 0.318 | 10.1 | -0.271 | -- | 0.321 | -- | -0.467 | -0.0542 | -- | 21.65 | 13 | -- | -- |
| 36.12 | 0.282 | 10 | -0.0265 | 0.527 | -- | -0.554 | -- | 0.0603 | 10.1 | -- | -- | -- | -- |
| 37.34 | 0.286 | 10 | -0.0485 | 0.53 | -- | -- | -- | 0.0589 | 10.1 | -- | -- | -- | -- |
| 48.05 | 0.323 | 10.1 | -0.16 | -- | 0.326 | -- | -- | -0.0302 | -- | 21.6 | 17 | -- | -- |
| 34.91 | 0.275 | 10 | -- | 0.492 | 0.241 | -- | -- | 0.0224 | 9.76 | 20.6 | 73 | -- | -- |
| 54.29 | 0.344 | 10 | -0.0554 | -- | -- | -- | -- | 0.0583 | -- | -- | -- | -- | -- |
| 37.4 | 0.286 | 10 | -- | 0.53 | -- | -- | -- | 0.0643 | 10.1 | -- | -- | -- | -- |
| 48.52 | 0.324 | 10 | -- | -- | 0.31 | -- | -- | -0.00492 | -- | 21.67 | 12 | -- | -- |
| 54.37 | 0.344 | 10 | -- | -- | -- | -- | -- | 0.0644 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 9 | 29.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 10 | 29.22 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 9 |
| 19 | 29.40 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 8 |
| 28 | 29.55 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 53 | 29.97 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 81 | 30.15 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 12 |
| 100 | 30.33 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 111 | 30.39 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 145 | 30.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 161 | 30.70 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 179 | 30.77 | temperature | 20 | 90 | > th | dose dependent | sin | 10 | NA |
| 194 | 30.82 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 1 |
| 195 | 30.82 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 4 |
| 198 | 30.82 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 210 | 30.85 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 220 | 30.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 229 | 30.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 233 | 30.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 243 | 30.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 282 | 31.09 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 14 |
| 312 | 31.18 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 14 |
| 316 | 31.20 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 479 | 31.59 | temperature | 25 | 270 | < th | dose independent | sin | 12 | NA |
| 487 | 31.60 | temperature | 25 | 10 | < th | dose dependent | sin | 7 | NA |
| 495 | 31.61 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 504 | 31.64 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 11 |
| 510 | 31.65 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 544 | 31.70 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 7 |
| 565 | 31.73 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 588 | 31.75 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 627 | 31.81 | radiation | 10 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 635 | 31.81 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 669 | 31.88 | temperature | 20 | 10 | < th | dose independent | sin | 7 | NA |
| 735 | 31.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 768 | 32.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 805 | 32.05 | wind | 1 | 30 | > th | dose independent | rect. | 1 | 23 |
| 823 | 32.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 14 |
| 868 | 32.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 869 | 32.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 878 | 32.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 3 |
| 954 | 32.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 978 | 32.24 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |