Os04g0397700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os04g0397700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.66 | 0.452 | 3.1 | 0.588 | 0.00262 | 0.414 | -0.497 | -1.29 | 0.231 | 0.129 | 24.2 | 5301 | -- | -- |
| 93.71 | 0.451 | 3.13 | 0.41 | 0.01 | 0.52 | 0.561 | -- | 0.212 | 12.3 | 21.4 | 9791 | -- | -- |
| 93.59 | 0.451 | 3.1 | 0.597 | 0.00366 | 0.4 | -- | -1.18 | 0.239 | 23.8 | 24 | 5240 | -- | -- |
| 93.88 | 0.451 | 3.14 | 0.492 | 0.0012 | 0.623 | -- | -- | 0.175 | 0.126 | 19.26 | 9552 | -- | -- |
| 93.59 | 0.451 | 3.1 | 0.582 | -- | 0.404 | -- | -1.14 | 0.236 | -- | 23.93 | 5220 | -- | -- |
| 98.31 | 0.465 | 3.18 | 0.0138 | 0.0285 | -- | 0.479 | -- | 0.00565 | 12.7 | -- | -- | -- | -- |
| 99.18 | 0.466 | 3.18 | 0.0329 | 0.0551 | -- | -- | -- | 0.00905 | 16.6 | -- | -- | -- | -- |
| 93.88 | 0.451 | 3.14 | 0.494 | -- | 0.636 | -- | -- | 0.181 | -- | 19.22 | 9558 | -- | -- |
| 95.72 | 0.456 | 3.16 | -- | 0.0222 | 0.298 | -- | -- | 0.0992 | 21.4 | 22.86 | 5290 | -- | -- |
| 99.34 | 0.466 | 3.18 | 0.0308 | -- | -- | -- | -- | 0.0076 | -- | -- | -- | -- | -- |
| 99.21 | 0.466 | 3.18 | -- | 0.0545 | -- | -- | -- | 0.00538 | 16.6 | -- | -- | -- | -- |
| 95.75 | 0.456 | 3.15 | -- | -- | 0.3 | -- | -- | 0.105 | -- | 22.86 | 5294 | -- | -- |
| 99.36 | 0.465 | 3.18 | -- | -- | -- | -- | -- | 0.00419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.92 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 2 | 88.98 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 89.01 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 9 | 89.20 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 13 | 89.25 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 14 | 89.32 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 15 | 89.32 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 17 | 89.32 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 18 | 89.32 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 21 | 89.32 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 89.32 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 24 | 89.32 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 89.32 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 30 | 89.32 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 31 | 89.32 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 36 | 89.32 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 37 | 89.34 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 39 | 89.35 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 47 | 89.45 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 56 | 89.77 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 58 | 89.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 60 | 89.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 64 | 90.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 116 | 90.39 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 128 | 90.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 154 | 90.62 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 218 | 90.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 233 | 90.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 239 | 90.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 242 | 90.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 247 | 90.86 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 248 | 90.86 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 265 | 90.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 291 | 90.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 325 | 91.01 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 331 | 91.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 396 | 91.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 434 | 91.27 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 439 | 91.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 452 | 91.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 490 | 91.42 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 498 | 91.44 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 509 | 91.47 | radiation | 1.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 511 | 91.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 513 | 91.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 547 | 91.54 | radiation | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 554 | 91.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 561 | 91.56 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 573 | 91.56 | wind | 9.0 | 90 | > th | dose independent | rect. | 18 | 16 |
| 585 | 91.57 | wind | 9.0 | 90 | > th | dose independent | rect. | 18 | 8 |
| 606 | 91.58 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 621 | 91.58 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 624 | 91.58 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 658 | 91.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 666 | 91.62 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 674 | 91.63 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 680 | 91.64 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 683 | 91.65 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 698 | 91.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 701 | 91.67 | wind | 9.0 | 90 | > th | dose independent | rect. | 18 | 5 |
| 716 | 91.68 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 736 | 91.69 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 741 | 91.70 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 776 | 91.73 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 828 | 91.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 896 | 91.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 911 | 91.79 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 923 | 91.80 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 932 | 91.80 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 939 | 91.81 | temperature | 30.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 951 | 91.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 11 |