BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0397700 Os04g0397700|Os04g0397700
         (204 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50930.1  | chr5:20722069-20724317 FORWARD LENGTH=243          102   2e-22

>AT5G50930.1 | chr5:20722069-20724317 FORWARD LENGTH=243
          Length = 242

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 59/76 (77%)

Query: 38  ISIATSEGKKAGMEVSDPVVACIADLAYKTVEQLAKDVELFAQHAGRKSIKMEDVILTAH 97
           ISIA +E KK GME+  PVVAC+ADLA+K  E +AKD+ELFA HAGRK + M+DV+L+AH
Sbjct: 133 ISIAEAEAKKNGMEIGGPVVACVADLAFKYAENVAKDLELFAHHAGRKVVNMDDVVLSAH 192

Query: 98  RNEHLMGLLRTFSQEL 113
           RN++L   LR+   EL
Sbjct: 193 RNDNLAASLRSLCNEL 208



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,948,048
Number of extensions: 93407
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)