Os04g0397500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os04g0397500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.32 | 0.589 | 7.76 | -0.467 | 0.329 | 1.54 | -1.53 | -1.44 | 0.317 | 11.8 | 21.87 | 9 | -- | -- |
| 159.63 | 0.588 | 7.76 | -0.471 | 0.257 | 1.44 | -0.141 | -- | 0.33 | 12.8 | 21.76 | 8 | -- | -- |
| 159.39 | 0.588 | 7.77 | -0.477 | 0.337 | 1.53 | -- | -0.175 | 0.309 | 12.6 | 21.72 | 6 | -- | -- |
| 159.45 | 0.588 | 7.77 | -0.48 | 0.34 | 1.53 | -- | -- | 0.323 | 12.7 | 22.04 | 8 | -- | -- |
| 161.13 | 0.591 | 7.77 | -0.492 | -- | 1.28 | -- | -0.182 | 0.311 | -- | 22.84 | 8 | -- | -- |
| 201.78 | 0.666 | 7.8 | -0.511 | 1.19 | -- | 0.344 | -- | 0.303 | 23.8 | -- | -- | -- | -- |
| 202.29 | 0.666 | 7.8 | -0.525 | 1.19 | -- | -- | -- | 0.302 | 23.8 | -- | -- | -- | -- |
| 161.31 | 0.592 | 7.77 | -0.485 | -- | 1.28 | -- | -- | 0.312 | -- | 22.61 | 8 | -- | -- |
| 165.34 | 0.599 | 7.75 | -- | 0.378 | 1.56 | -- | -- | 0.369 | 12.7 | 22.07 | 8 | -- | -- |
| 291.58 | 0.798 | 7.77 | -0.49 | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
| 209.56 | 0.677 | 7.79 | -- | 1.18 | -- | -- | -- | 0.36 | 23.8 | -- | -- | -- | -- |
| 167.37 | 0.603 | 7.76 | -- | -- | 1.28 | -- | -- | 0.36 | -- | 22.17 | 6 | -- | -- |
| 297.91 | 0.806 | 7.76 | -- | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.28 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 5 | 154.41 | radiation | 10 | 10 | < th | dose dependent | sin | 23 | NA |
| 10 | 155.93 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 17 | 157.32 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 20 | 157.73 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 26 | 158.28 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 38 | 158.81 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 19 |
| 39 | 158.83 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 44 | 158.96 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 46 | 159.02 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 50 | 159.07 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 53 | 159.19 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 58 | 159.37 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 83 | 160.16 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 102 | 160.82 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 121 | 161.37 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 129 | 161.48 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 150 | 161.93 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 156 | 162.15 | wind | 1 | 270 | > th | dose independent | rect. | 2 | 17 |
| 177 | 162.68 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 181 | 162.79 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 7 |
| 182 | 162.81 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 186 | 162.85 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 217 | 163.46 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 242 | 163.74 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 272 | 164.22 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 281 | 164.28 | radiation | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 317 | 164.54 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 10 |
| 339 | 164.72 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 12 |
| 343 | 164.74 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 366 | 164.87 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 9 |
| 369 | 164.88 | humidity | 80 | 90 | < th | dose independent | rect. | 21 | 19 |
| 370 | 164.89 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 13 |
| 388 | 165.02 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 411 | 165.20 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 418 | 165.23 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 419 | 165.23 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 15 |
| 425 | 165.26 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 12 |
| 451 | 165.40 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 18 |
| 471 | 165.55 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 16 |
| 477 | 165.57 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 519 | 165.90 | humidity | 50 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 528 | 165.97 | temperature | 15 | 30 | > th | dose independent | rect. | 20 | 7 |
| 532 | 165.99 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 7 |
| 576 | 166.19 | radiation | 10 | 10 | < th | dose independent | sin | 23 | NA |
| 587 | 166.24 | humidity | 50 | 10 | > th | dose independent | rect. | 3 | 17 |
| 602 | 166.32 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 608 | 166.34 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 612 | 166.37 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 15 |
| 620 | 166.43 | radiation | 30 | 270 | < th | dose independent | rect. | 24 | 9 |
| 622 | 166.46 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 641 | 166.58 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 17 |
| 649 | 166.65 | humidity | 90 | 270 | < th | dose dependent | sin | 7 | NA |
| 661 | 166.73 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 12 |
| 692 | 166.92 | radiation | 10 | 10 | > th | dose independent | sin | 23 | NA |
| 698 | 166.95 | humidity | 50 | 10 | > th | dose dependent | sin | 2 | NA |
| 709 | 166.99 | humidity | 70 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 725 | 167.09 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 793 | 167.30 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 19 |
| 796 | 167.30 | humidity | 90 | 90 | < th | dose dependent | sin | 4 | NA |
| 844 | 167.43 | atmosphere | 995 | 30 | > th | dose independent | rect. | 3 | 17 |
| 928 | 167.73 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 947 | 167.76 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 968 | 167.84 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 9 |
| 991 | 167.93 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |