BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0397500 Os04g0397500|Os04g0397500
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33550.1 | chr2:14210180-14211487 REVERSE LENGTH=315 154 8e-38
AT2G35640.1 | chr2:14982835-14984182 FORWARD LENGTH=341 73 2e-13
AT1G31310.1 | chr1:11198565-11200025 REVERSE LENGTH=384 65 4e-11
AT4G31270.1 | chr4:15183291-15184503 REVERSE LENGTH=295 64 2e-10
AT5G51800.1 | chr5:21048317-21051906 FORWARD LENGTH=973 51 8e-07
>AT2G33550.1 | chr2:14210180-14211487 REVERSE LENGTH=315
Length = 314
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 14/136 (10%)
Query: 4 GGEVSGRAPRLPRWTRQEILVLIEGKRVVEXXXXXXXXXXXXXAAA--EPTKWAAVAEYC 61
GG+ + RLPRWTRQEILVLI+GKRV E + EP KWA+V+ YC
Sbjct: 26 GGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQMEP-KWASVSSYC 84
Query: 62 RRHGLERGPVQCRKRWSNLAGDYKKIREWERXXXXXXXXXXXXGMGKEVSFWAMRNDARR 121
+RHG+ RGPVQCRKRWSNLAGDYKKI+EWE S+W MRND RR
Sbjct: 85 KRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETE-----------SYWVMRNDVRR 133
Query: 122 ERRLPGFFDREVYDIL 137
E++LPGFFD+EVYDI+
Sbjct: 134 EKKLPGFFDKEVYDIV 149
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 9/103 (8%)
Query: 236 GTSRAKQPE--QIVEDSPAQGAHKRQRSD-------DASGEAPDLQGQLIEILDRSSRMV 286
G + KQPE + S +Q KR+R+ + GE +Q QLIEIL+R+ +++
Sbjct: 212 GRVKEKQPEAANVEGGSTSQEERKRKRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLL 271
Query: 287 AAQLEAQNINCQLDREQRKDQVSSLLGVLGKVADALYRIADKM 329
AAQLE QN+N +LDREQRKD SL+ VL K+ADA+ +IADKM
Sbjct: 272 AAQLEVQNLNLKLDREQRKDHGDSLVAVLNKLADAVAKIADKM 314
>AT2G35640.1 | chr2:14982835-14984182 FORWARD LENGTH=341
Length = 340
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 2 SGGGEVSGRAPRLPRWTRQEILVLIEGKRVVEXXXXXXXXXXXXXAAAEPT--KWAAVAE 59
S G ++ R R WT E LVLIE K++ + +P +W + E
Sbjct: 7 SSGEQIVMRECRKGNWTVSETLVLIEAKKM-DDQRRVRRSEKQPEGRNKPAELRWKWIEE 65
Query: 60 YCRRHGLERGPVQCRKRWSNLAGDYKKIREWERXXXXXXXXXXXXGMGKEVSFWAMRNDA 119
YC R G R QC +W NL DYKKIRE+ER S+W M
Sbjct: 66 YCWRRGCYRNQNQCNDKWDNLMRDYKKIREYERSRVESSFNTVTSS-----SYWKMDKTE 120
Query: 120 RRERRLPGFFDREVYDIL 137
R+E+ LP ++YD+L
Sbjct: 121 RKEKNLPSNMLPQIYDVL 138
>AT1G31310.1 | chr1:11198565-11200025 REVERSE LENGTH=384
Length = 383
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 3 GGGEVSGRAPRLPRWTRQEILVLIEGKRVVEXXXXXXX------XXXXXXAAAEPT--KW 54
GG V R R WT E +VLIE KR+ + + +P +W
Sbjct: 5 SGGLVMMREYRKGNWTLNETMVLIEAKRMDDERRMRRSIGLPPPEQQQDIRSNKPAELRW 64
Query: 55 AAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWER-----XXXXXXXXXXXXGMGKE 109
+ +YC R G R QC +W NL DYKK+RE+ER G+
Sbjct: 65 KWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVESSITAGESSSSSAPAGET 124
Query: 110 VSFWAMRNDARRERRLPGFFDREVYDIL 137
S+W M R+ER LP + Y L
Sbjct: 125 ASYWKMEKSERKERSLPSNMLPQTYQAL 152
>AT4G31270.1 | chr4:15183291-15184503 REVERSE LENGTH=295
Length = 294
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 10 RAPRLPRWTRQEILVLIEGKRVVEXXXXXXXXXXXXXAAAEPTKWAAVAEYCRRHGLERG 69
R+ P W ++ LVL+ VE A + KW + E C + R
Sbjct: 12 RSQVAPEWAVKDCLVLVNEIAAVEADCSN--------ALSSFQKWTMITENCNALDVSRN 63
Query: 70 PVQCRKRWSNLAGDYKKIREWERXXXXXXXXXXXXGMGKEVSFWAMRNDARRERRLPGFF 129
QCR++W +L DY +I++WE G G+ S+W++ +D R+ LPG
Sbjct: 64 LNQCRRKWDSLMSDYNQIKKWE---------SQYRGTGR--SYWSLSSDKRKLLNLPGDI 112
Query: 130 DREVYDIL 137
D E+++ +
Sbjct: 113 DIELFEAI 120
>AT5G51800.1 | chr5:21048317-21051906 FORWARD LENGTH=973
Length = 972
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 57 VAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERXXXXXXXXXXXXGMGKEVSFWAMR 116
VAEY RHG+ R +W N+ G+++K+ EWE+ GK S++ +
Sbjct: 193 VAEYLNRHGINRDSKIAGTKWDNMLGEFRKVYEWEKCGDQDK-------YGK--SYFRLS 243
Query: 117 NDARRERRLPGFFDREVY 134
R++ RLP FD EVY
Sbjct: 244 PYERKQHRLPASFDEEVY 261
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,074,565
Number of extensions: 158052
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 6
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)