Os04g0394700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0394700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.14 | 0.349 | 9.79 | 0.794 | 0.714 | 0.401 | 0.595 | -1.8 | 0.541 | 3.56 | 89.62 | 245 | -- | -- |
| 60.26 | 0.362 | 9.77 | 0.782 | 0.652 | 0.37 | 0.192 | -- | 0.535 | 3.24 | 88 | 314 | -- | -- |
| 55.88 | 0.348 | 9.78 | 0.765 | 0.696 | 0.426 | -- | -1.4 | 0.539 | 3.53 | 89.58 | 252 | -- | -- |
| 59.6 | 0.36 | 9.77 | 0.723 | 0.658 | 0.387 | -- | -- | 0.53 | 3.56 | 88.69 | 245 | -- | -- |
| 64.5 | 0.374 | 9.77 | 0.791 | -- | 0.816 | -- | -0.62 | 0.555 | -- | 70.5 | 164 | -- | -- |
| 62.25 | 0.37 | 9.78 | 0.758 | 0.846 | -- | -0.0374 | -- | 0.465 | 3.83 | -- | -- | -- | -- |
| 62.26 | 0.369 | 9.78 | 0.758 | 0.846 | -- | -- | -- | 0.466 | 3.82 | -- | -- | -- | -- |
| 65.89 | 0.378 | 9.77 | 0.748 | -- | 0.789 | -- | -- | 0.539 | -- | 69.28 | 138 | -- | -- |
| 72.79 | 0.397 | 9.79 | -- | 0.644 | 0.459 | -- | -- | 0.463 | 3.38 | 88.23 | 261 | -- | -- |
| 101.66 | 0.471 | 9.79 | 0.793 | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
| 77.4 | 0.412 | 9.8 | -- | 0.861 | -- | -- | -- | 0.381 | 3.81 | -- | -- | -- | -- |
| 80.49 | 0.418 | 9.79 | -- | -- | 0.811 | -- | -- | 0.461 | -- | 71 | 159 | -- | -- |
| 118.25 | 0.508 | 9.81 | -- | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.17 | wind | 3 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 52.59 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 5 | 52.70 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 6 | 52.73 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 9 | 52.78 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 11 | 52.83 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 12 | 52.84 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 14 | 52.86 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 31 | 52.96 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 56 | 53.04 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 57 | 53.05 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 64 | 53.06 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 65 | 53.06 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 68 | 53.06 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 69 | 53.06 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 73 | 53.07 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 77 | 53.07 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 78 | 53.07 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 92 | 53.09 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 127 | 53.18 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 151 | 53.25 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 167 | 53.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 212 | 53.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 235 | 53.39 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 245 | 53.39 | wind | 9 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 266 | 53.42 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 285 | 53.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 297 | 53.45 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 12 | NA |
| 328 | 53.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 336 | 53.54 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 338 | 53.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 382 | 53.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 386 | 53.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 472 | 53.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 475 | 53.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 478 | 53.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 512 | 53.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 638 | 53.83 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 639 | 53.83 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 645 | 53.84 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 666 | 53.85 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 851 | 53.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 869 | 53.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 892 | 54.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 901 | 54.01 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 909 | 54.01 | wind | 9 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 936 | 54.03 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 954 | 54.03 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 971 | 54.05 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 1 |