BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0394700 Os04g0394700|AK072978
(624 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33490.1 | chr2:14183552-14187666 FORWARD LENGTH=624 372 e-103
AT3G26910.2 | chr3:9915304-9918511 REVERSE LENGTH=615 293 1e-79
AT5G41100.1 | chr5:16447429-16450610 FORWARD LENGTH=587 275 5e-74
>AT2G33490.1 | chr2:14183552-14187666 FORWARD LENGTH=624
Length = 623
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 272/641 (42%), Positives = 367/641 (57%), Gaps = 81/641 (12%)
Query: 1 MKSPLRKFRGFGLHSH--RERKDHRPPPAKLDELADAAQEMEEMRNCYDSLLSAAAATMN 58
MK+ LR+ RG LH H ++R+D R K DELA A+Q++E+MR+CYDSLL+AAAAT N
Sbjct: 1 MKTSLRRLRGV-LHKHESKDRRDLRALVQK-DELAQASQDVEDMRDCYDSLLNAAAATAN 58
Query: 59 SVYEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLGKAQFELQKFVDNYRXXXXXXXXX 118
S YEF+E++ E+G CLLEKTALN DD++SGRVL+MLGK QFELQK VD YR
Sbjct: 59 SAYEFSESLRELGACLLEKTALN-DDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITI 117
Query: 119 PSESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLSSEQLQAYFLDYQ 178
PSESLL EL++VEEM+ LCD KR YE M REKGRS+ K ET S +QLQ DY+
Sbjct: 118 PSESLLNELRIVEEMQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFSPQQLQEAHDDYE 177
Query: 179 EDAALFIFRLKSLKQGQFRSILTQAARHHSAQLSFFRRGLKYLEALEPHVKAVAEKQHIE 238
+ LF+FRLKSLKQGQ RS+LTQAARHH+AQL FF++ L LE ++PHV+ V E QHI+
Sbjct: 178 NETTLFVFRLKSLKQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHID 237
Query: 239 YPLNGLDDDTDNDEYSSYQGNQS---DDSELSFDYEINDRDKDFPASR-SSMDLDQSN-- 292
Y +GL+DD +DE + + + S DD ELSF+Y +ND+D+D +S S +L S+
Sbjct: 238 YHFSGLEDDDGDDEIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDIT 297
Query: 293 --QACSPEPLKEHKQEYTEQIQADFAAPRVKLEIGTQSAPISADNVFDPSTR--FRKMNT 348
Q P +E+ +E + F R + +QSAP+ +N P + R +T
Sbjct: 298 FPQIGGPYTAQEN-EEGNYRKSHSF---RRDVRAVSQSAPLFPENRTTPPSEKLLRMRST 353
Query: 349 SNRTNYSYKLPTPDD-----DKNSTSAHTNRSPHSDQPESKSHVAENLWHSSPLVKGFKP 403
R +Y LPTP + ++ H N S P + + +W+SSPL
Sbjct: 354 LTRKFNTYALPTPVETTRSPSSTTSPGHKNVG--SSNPTKA--ITKQIWYSSPLET---- 405
Query: 404 NSMFSGPVKMPS----------------STEGISAPLVYPYATSDFKKMKREAFSGPIPS 447
GP K+ S +T + PL S +KR +FSGP+ S
Sbjct: 406 ----RGPAKVSSRSMVALKEQVLRESNKNTSRLPPPLADGLLFSRLGTLKRRSFSGPLTS 461
Query: 448 KAGLNKPLFSATDLRAPMNYPRAMSTKSYGPGWQSSVAPKFTPRITSLPTTS------PR 501
K NKPL + + L + GP ++ V+ P+++S PT S P+
Sbjct: 462 KPLPNKPLSTTSHLYS-------------GPIPRNPVSK--LPKVSSSPTASPTFVSTPK 506
Query: 502 ISELHELPRPPANVGAARPGLVGYSGPLVSRRQVPNVPTRASPPSQTASPLPRPPAAMTR 561
ISELHELPRPP +GYS PLVSR Q+ + P + +ASPLP PP A+TR
Sbjct: 507 ISELHELPRPPPRSSTKSSRELGYSAPLVSRSQLLSKPLI----TNSASPLPIPP-AITR 561
Query: 562 SYSIPSNSQRTPILTVNKLLEARHSRESSEVSSPPLTPISL 602
S+SIP+++ R L ++K + SPPLTP+SL
Sbjct: 562 SFSIPTSNLRASDLDMSK---TSLGTKKLGTPSPPLTPMSL 599
>AT3G26910.2 | chr3:9915304-9918511 REVERSE LENGTH=615
Length = 614
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 237/639 (37%), Positives = 342/639 (53%), Gaps = 85/639 (13%)
Query: 1 MKSPLRKFRGFGLHSHR---ERKDHRPPPAKLDELADAAQEMEEMRNCYDSLLSAAAATM 57
MK+ + K R HSH+ + K ++DEL A ++M++MR CYD LL+AAAAT
Sbjct: 1 MKASIEKLRRLTSHSHKVDVKEKGDVMATTQIDELDRAGKDMQDMRECYDRLLAAAAATA 60
Query: 58 NSVYEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLGKAQFELQKFVDNYRXXXXXXXX 117
NS YEF+E++ EMG+CL E+ A ++D++S R+L MLGK Q ELQ+ +D YR
Sbjct: 61 NSAYEFSESLGEMGSCL-EQIA-PHNDEESSRILFMLGKVQSELQRLLDTYRSHIFETIT 118
Query: 118 XPSESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLSSEQLQAYFLDY 177
PSE+LLK+L+ VE+MK+ CD KR YE + +EKGR + SK E + + + ++
Sbjct: 119 SPSEALLKDLRYVEDMKQQCDGKRNVYEM--SLVKEKGRPKSSKGERHIPPESRPAYSEF 176
Query: 178 QEDAALFIFRLKSLKQGQFRSILTQAARHHSAQLSFFRRGLKYLEALEPHVKAVAEKQHI 237
++A + IFRLKSLK+GQ RS+L QA RHH+AQ+ F GLK LEA+E HVK EKQHI
Sbjct: 177 HDEATMCIFRLKSLKEGQARSLLIQAVRHHTAQMRLFHTGLKSLEAVERHVKVAVEKQHI 236
Query: 238 EYPLN-------GLDDDTDNDEYSSYQGNQSDDSELSFDYEINDRDKD-----FPASRSS 285
+ L+ +DD D+ Y + +G ELSFDY N++ + P +
Sbjct: 237 DCDLSVHGNEMEASEDDDDDGRYMNREG------ELSFDYRTNEQKVEASSLSTPWATKM 290
Query: 286 MDLDQS---NQACSPEPLK-EHKQEYTEQIQADFAAPRVKLEIGTQSAPISADNVFDPST 341
D D S P + +H++EY + + + + SAP+ + D S
Sbjct: 291 DDTDLSFPRPSTTRPAAVNADHREEYPVSTRDKY--------LSSHSAPLFPEKKPDVSE 342
Query: 342 RFRKMNTSNRTNYSYKLPTPDDDKNSTSAHTNRSPHSDQPESKSHVAENLWHSSPL--VK 399
R R+ N S +Y LPTP+D + S + P +H A N+WHSSPL +K
Sbjct: 343 RLRQANPSFN---AYVLPTPNDSRYSKPVS-----QALNPRPTNHSAGNIWHSSPLEPIK 394
Query: 400 GFK-----PNSMFSGPVKMPSSTEGISAPLVYPYATSDFKKMKREAFSGPIPSKAGLNKP 454
K ++ F G + PS+T+ + R AFSGP+ + KP
Sbjct: 395 SGKDGKDAESNSFYGRLPRPSTTD---------THHHQQQAAGRHAFSGPL--RPSSTKP 443
Query: 455 LFSA---TDLRAPMNYPRAMSTKSYGPGWQSSVAPKFTPRITSLPTTSPRISELHELPRP 511
+ A + P+ P + + SS +P+ +P + P +SPR++ELHELPRP
Sbjct: 444 ITMADSYSGAFCPLPTPPVLQSHP-----HSSSSPRVSPTASPPPASSPRLNELHELPRP 498
Query: 512 PANVG-----AARPGLVGYSGPLVSRRQVPNVPTRASPPSQ--TASPLPRPPAAMTRSYS 564
P + A PGLVG+S PL + Q + T A P + ASPLP PP + RSYS
Sbjct: 499 PGHFAPPPRRAKSPGLVGHSAPLTAWNQERSTVTVAVPSATNIVASPLPVPPLVVPRSYS 558
Query: 565 IPSNSQRTPILTVNKLLEARHSRESSEVSSPPLTPISLA 603
IPS +QR + +L+E R V+SPPLTP+SL+
Sbjct: 559 IPSRNQR---VVSQRLVE----RRDDIVASPPLTPMSLS 590
>AT5G41100.1 | chr5:16447429-16450610 FORWARD LENGTH=587
Length = 586
Score = 275 bits (703), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 231/618 (37%), Positives = 328/618 (53%), Gaps = 103/618 (16%)
Query: 25 PPAKLDELADAAQEMEEMRNCYDSLLSAAAATMNSVYEFAEAMEEMGTCLLEKTALNYDD 84
P A+++ LA AA++M++MR YD LL AAA NS YEF+E++ EMG+CL E+ A ++D
Sbjct: 27 PTAQIEGLARAAKDMQDMREGYDRLLEVAAAMANSAYEFSESLGEMGSCL-EQIA-PHND 84
Query: 85 DDSGRVLMMLGKAQFELQKFVDNYRXXXXXXXXXPSESLLKELQVVEEMKELCDHKRQEY 144
+SG +L+MLGK QFEL+K VD YR PSESLL +L+ VE+MK+ C+ KR
Sbjct: 85 QESGGILLMLGKVQFELKKLVDTYRSQIFKTITRPSESLLSDLRTVEDMKQQCEEKRDVV 144
Query: 145 EAMRAAY-REKGRSRHSKTETLSSEQLQAYFLDYQEDAALFIFRLKSLKQGQFRSILTQA 203
+ M + ++K + + +K E L QL+ + Q++A L IFRLKSLK+GQ RS+LTQA
Sbjct: 145 KHMLMEHVKDKVQVKGTKGERLIRRQLETARDELQDEATLCIFRLKSLKEGQARSLLTQA 204
Query: 204 ARHHSAQLSFFRRGLKYLEALEPHVKAVAEKQHIEYPLNGLDDDTDNDEYSSYQGNQSD- 262
ARHH+AQ+ F GLK LEA+E HV+ A++QHI+ L+ ++ D E + +
Sbjct: 205 ARHHTAQMHMFFAGLKSLEAVEQHVRIAADRQHIDCVLSDPGNEMDCSEDNDDDDRLVNR 264
Query: 263 DSELSFDYEINDRDKDFPAS-RSSM---DLDQSNQACSP--------EPLKEHKQEYTEQ 310
D ELSFDY +++ + ++ SM D D S Q SP +P +EH ++
Sbjct: 265 DGELSFDYITSEQRVEVISTPHGSMKMDDTDLSFQRPSPAGSATVNADPREEHSVSNRDR 324
Query: 311 IQADFAAPRVKLEIGTQSAPISADNVFDPSTR-FRKMNTSNRTNYSYKLPTPDDDKNSTS 369
+ SAP+ D D + R R+M S +Y LPTP D K+S
Sbjct: 325 ------------RTSSHSAPLFPDKKADLADRSMRQMTPSAN---AYILPTPVDSKSS-- 367
Query: 370 AHTNRSPHSDQPESKSHVAENLWHSSPL--VKGFKPNSMFSGPVKMPSSTEGISAPLVYP 427
P +P ++++ + NLWHSSPL +K ++ + ++P +E
Sbjct: 368 ------PIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYSRLPRPSE--------- 412
Query: 428 YATSDFKKMKREAFSGPIPSKAGLNKPLFSATDLRAPMNYPRAMSTKSYGPGWQSSVAPK 487
AFSGP+ KP S+T L P+ A+ +S P ++P
Sbjct: 413 -----------HAFSGPL-------KP--SSTRLPVPV----AVQAQSSSP----RISPT 444
Query: 488 FTPRITSLPTTSPRISELHELPRPPANVGAAR----PGLVGYSGPLVSRRQ-VPNVPTRA 542
+P + S SPRI+ELHELPRPP R PGLVG+S PL + Q NV
Sbjct: 445 ASPPLAS----SPRINELHELPRPPGQFAPPRRSKSPGLVGHSAPLTAWNQERSNVVVST 500
Query: 543 SPPSQTASPLPRPPAAMTRSYSIPSNSQRTPILTVNKLLEARHSRESSEVSSP---PLTP 599
+ ASPLP PP + RSYSIPS +QR + L E R + V+SP PLTP
Sbjct: 501 N---IVASPLPVPPLVVPRSYSIPSRNQRA--MAQQPLPE----RNQNRVASPPPLPLTP 551
Query: 600 ISLAD---VSRRSTAETA 614
SL + +SR E A
Sbjct: 552 ASLMNLRSLSRSHVGEVA 569
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,686,615
Number of extensions: 616878
Number of successful extensions: 2967
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2955
Number of HSP's successfully gapped: 4
Length of query: 624
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 519
Effective length of database: 8,227,889
Effective search space: 4270274391
Effective search space used: 4270274391
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)