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Os04g0394500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA polymerase III RPC4 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0218) R2 : 0.59
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.17 (0.0458) R2dN8 : 0.762 R2N8 : 0.59
σ : 0.41
deviance : 77.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.42 0.347 9.43 -0.527 4.32e-05 -0.673 -0.599 -0.088 1.08 6.63 80 1125 -- --
54.43 0.344 9.43 -0.521 0.0027 -0.679 -0.599 -- 1.08 6.52 80 1128 -- --
55.3 0.346 9.42 -0.534 0.0183 -0.672 -- -0.0247 1.08 5.47 79.99 1140 -- --
55.24 0.346 9.43 -0.525 0.0372 -0.695 -- -- 1.08 0.637 80 1129 -- --
55.31 0.346 9.43 -0.533 -- -0.674 -- -0.0112 1.08 -- 80 1135 -- --
65.42 0.379 9.42 -0.637 0.0291 -- -0.56 -- 1.1 6.54 -- -- -- --
65.26 0.378 9.42 -0.641 0.125 -- -- -- 1.1 11.8 -- -- -- --
55.31 0.346 9.43 -0.529 -- -0.676 -- -- 1.08 -- 80 1135 -- --
62.26 0.367 9.42 -- 0.0463 -0.794 -- -- 1.12 1.3 79 1136 -- --
66.24 0.38 9.42 -0.644 -- -- -- -- 1.1 -- -- -- -- --
76.07 0.408 9.4 -- 0.134 -- -- -- 1.18 12.1 -- -- -- --
62.37 0.368 9.41 -- -- -0.771 -- -- 1.13 -- 78.92 1141 -- --
77.2 0.41 9.4 -- -- -- -- -- 1.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.87 wind 3.0 4320 < th dose independent rect. 8 1
2 53.94 temperature 10.0 270 > th dose dependent rect. 5 8
4 54.12 wind 3.0 4320 > th dose independent rect. 8 1
5 54.13 humidity 80.0 720 < th dose dependent rect. 18 14
7 54.28 humidity 60.0 90 > th dose dependent rect. 18 9
11 54.39 temperature 15.0 90 > th dose dependent rect. 7 8
12 54.42 temperature 15.0 90 > th dose dependent rect. 19 20
13 54.43 temperature 25.0 270 < th dose independent rect. 24 7
14 54.44 temperature 10.0 270 > th dose dependent rect. 19 16
16 54.46 humidity 80.0 720 < th dose dependent sin 11 NA
20 54.65 humidity 80.0 720 < th dose dependent rect. 19 6
27 54.70 humidity 80.0 720 < th dose dependent rect. 18 10
33 54.75 wind 3.0 1440 < th dose dependent rect. 8 1
38 54.79 humidity 50.0 270 > th dose independent rect. 6 19
66 55.08 humidity 50.0 270 > th dose independent rect. 5 21
102 55.36 temperature 30.0 90 < th dose independent rect. 18 9
110 55.43 humidity 70.0 90 > th dose independent rect. 18 9
125 55.53 humidity 80.0 14400 < th dose dependent rect. 6 1
136 55.58 wind 3.0 1440 < th dose dependent rect. 7 4
191 55.90 radiation 10.0 270 < th dose independent rect. 15 10
201 55.97 humidity 80.0 14400 < th dose independent rect. 6 1
202 55.97 humidity 50.0 1440 < th dose dependent rect. 16 1
204 55.99 humidity 50.0 1440 < th dose independent rect. 16 1
220 56.02 humidity 50.0 720 > th dose dependent rect. 15 19
231 56.07 humidity 80.0 1440 < th dose independent rect. 6 2
239 56.09 temperature 25.0 270 > th dose independent rect. 18 19
240 56.09 temperature 10.0 10 > th dose dependent rect. 9 18
243 56.12 precipitation 0.1 270 < th dose independent rect. 1 16
246 56.12 precipitation 0.1 270 < th dose dependent rect. 1 16
249 56.14 temperature 25.0 270 < th dose independent sin 8 NA
252 56.15 temperature 25.0 270 < th dose independent rect. 24 17
256 56.16 temperature 25.0 270 > th dose independent rect. 19 17
261 56.17 temperature 20.0 270 > th dose dependent rect. 9 1
272 56.20 temperature 25.0 270 > th dose independent rect. 21 15
283 56.22 precipitation 0.1 270 < th dose independent rect. 13 16
286 56.22 humidity 90.0 90 < th dose dependent rect. 15 16
287 56.22 precipitation 0.1 270 < th dose dependent rect. 13 16
308 56.28 humidity 80.0 720 < th dose independent rect. 19 2
318 56.30 temperature 25.0 270 > th dose dependent rect. 20 15
325 56.32 temperature 10.0 90 > th dose dependent rect. 19 8
329 56.32 radiation 1.0 90 < th dose dependent rect. 5 22
345 56.36 radiation 10.0 270 < th dose dependent rect. 15 10
360 56.41 wind 1.0 270 > th dose independent rect. 1 16
361 56.41 atmosphere 995.0 270 > th dose independent rect. 1 16
374 56.43 wind 3.0 1440 < th dose independent rect. 7 4
377 56.44 wind 3.0 43200 > th dose independent rect. 1 2
378 56.44 humidity 80.0 1440 > th dose independent rect. 6 2
382 56.44 radiation 1.0 90 < th dose dependent rect. 7 20
384 56.45 radiation 30.0 90 < th dose independent rect. 3 16
391 56.46 atmosphere 995.0 270 > th dose independent rect. 13 16
392 56.46 wind 3.0 1440 < th dose dependent rect. 7 6
410 56.50 humidity 50.0 720 > th dose dependent rect. 15 14
415 56.51 humidity 90.0 270 < th dose dependent rect. 12 19
443 56.55 humidity 50.0 720 > th dose dependent sin 14 NA
446 56.56 humidity 80.0 14400 > th dose independent rect. 5 2
448 56.56 radiation 1.0 90 < th dose dependent rect. 9 18
452 56.57 wind 7.0 270 < th dose independent rect. 17 8
454 56.57 radiation 1.0 90 < th dose dependent rect. 12 15
458 56.58 humidity 50.0 270 > th dose independent rect. 16 22
459 56.58 wind 7.0 30 < th dose dependent rect. 3 6
468 56.59 humidity 50.0 270 > th dose dependent rect. 6 19
470 56.60 wind 9.0 270 < th dose dependent rect. 6 7
482 56.61 humidity 50.0 270 > th dose dependent rect. 7 17
484 56.62 wind 3.0 1440 > th dose independent rect. 7 4
498 56.64 temperature 15.0 270 > th dose independent rect. 13 16
503 56.64 wind 9.0 270 < th dose dependent rect. 6 19
505 56.65 humidity 50.0 1440 > th dose independent rect. 16 1
523 56.67 humidity 50.0 720 > th dose dependent rect. 15 12
556 56.71 wind 3.0 1440 < th dose independent rect. 10 1
562 56.72 temperature 15.0 270 > th dose independent rect. 1 16
578 56.73 humidity 90.0 720 < th dose dependent rect. 10 22
581 56.74 humidity 60.0 720 > th dose independent rect. 17 17
599 56.76 temperature 15.0 90 > th dose independent rect. 3 16
601 56.76 temperature 30.0 720 > th dose dependent rect. 18 1
643 56.79 humidity 80.0 720 > th dose independent rect. 7 22
649 56.80 temperature 20.0 270 > th dose independent rect. 5 8
654 56.81 temperature 25.0 270 > th dose independent sin 8 NA
656 56.81 wind 7.0 90 < th dose independent rect. 19 8
663 56.81 humidity 50.0 720 > th dose dependent rect. 7 23
664 56.82 precipitation 0.1 10 < th dose independent rect. 3 6
672 56.82 precipitation 0.1 10 < th dose dependent rect. 3 6
681 56.83 precipitation 0.1 270 < th dose independent rect. 1 5
684 56.83 precipitation 0.1 270 < th dose dependent rect. 1 5
695 56.85 wind 3.0 43200 < th dose independent rect. 1 2
717 56.87 precipitation 0.1 270 < th dose independent rect. 24 7
719 56.87 humidity 80.0 720 < th dose independent rect. 10 23
721 56.87 precipitation 0.1 270 < th dose dependent rect. 24 7
726 56.88 humidity 50.0 270 > th dose independent rect. 6 7
728 56.88 humidity 80.0 1440 < th dose independent rect. 2 12
736 56.89 wind 1.0 4320 > th dose dependent rect. 8 1
743 56.90 wind 1.0 270 > th dose independent rect. 24 7
759 56.91 wind 1.0 43200 > th dose dependent rect. 1 2
760 56.91 temperature 30.0 270 < th dose dependent rect. 24 6
767 56.92 radiation 1.0 90 < th dose independent rect. 7 20
768 56.92 humidity 80.0 720 < th dose independent rect. 18 21
775 56.92 humidity 50.0 720 > th dose dependent rect. 5 23
784 56.93 humidity 90.0 270 < th dose dependent rect. 12 12
789 56.94 wind 5.0 270 < th dose independent rect. 1 5
795 56.94 temperature 20.0 270 > th dose independent rect. 5 20
799 56.94 humidity 90.0 270 < th dose dependent rect. 12 10
802 56.94 temperature 30.0 90 < th dose dependent rect. 3 14
831 56.97 wind 1.0 270 > th dose independent rect. 3 1
832 56.97 wind 5.0 30 < th dose independent rect. 3 6
848 56.98 temperature 10.0 270 > th dose independent rect. 17 8
854 56.98 atmosphere 1015.0 270 < th dose independent rect. 1 16
855 56.98 wind 7.0 270 < th dose independent rect. 6 19
860 56.98 humidity 90.0 720 < th dose dependent rect. 1 23
888 57.00 radiation 1.0 90 < th dose independent rect. 9 18
890 57.00 humidity 80.0 720 > th dose independent rect. 10 23
909 57.01 humidity 50.0 90 > th dose dependent rect. 9 18
912 57.02 precipitation 0.1 270 < th dose independent rect. 3 2
913 57.02 temperature 10.0 90 > th dose independent rect. 19 8
917 57.02 atmosphere 995.0 90 > th dose independent rect. 19 8
923 57.02 radiation 1.0 90 < th dose independent rect. 12 15
925 57.02 atmosphere 1015.0 90 < th dose independent rect. 3 16
930 57.02 precipitation 0.1 270 < th dose dependent rect. 3 2
953 57.03 humidity 90.0 720 < th dose dependent no NA NA
968 57.04 humidity 80.0 720 > th dose independent rect. 17 22
980 57.05 radiation 30.0 90 < th dose independent rect. 3 6
981 57.05 wind 5.0 270 < th dose independent rect. 24 7
986 57.05 humidity 80.0 720 > th dose independent rect. 12 23
988 57.05 wind 9.0 90 < th dose dependent rect. 18 9
997 57.06 humidity 80.0 1440 > th dose independent rect. 1 13