BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0394500 Os04g0394500|Os04g0394500
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09380.1 | chr5:2911313-2913136 REVERSE LENGTH=273 174 3e-44
AT4G25180.1 | chr4:12911746-12913907 REVERSE LENGTH=312 156 9e-39
>AT5G09380.1 | chr5:2911313-2913136 REVERSE LENGTH=273
Length = 272
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 155/279 (55%), Gaps = 37/279 (13%)
Query: 7 REPAEESKDETVD--------KELLMKLKTSQSTDPFVRKFKTEKKEMRTQVAF--GQGN 56
R P E K E V+ ELL ++ +RK K +KK +QVA+ G N
Sbjct: 20 RVPKPEVKPEVVEDNSNSAQASELLRRVNERS-----LRKPKADKKVPASQVAWLGGVVN 74
Query: 57 SSYARSFPMQSS-ADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGE 115
S+ + + +S+ A GS S EY EPWDY +S YP+TLP+RRPY+GDPE+L+ EEF +
Sbjct: 75 STRSNKYLNRSNGAYGSTSTQEIEYKEPWDY-YSYYPITLPMRRPYAGDPEVLDVEEFMQ 133
Query: 116 SSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPT 175
A G + L TA LGLM S + ++ F ++P S+PL P ET E
Sbjct: 134 --AGGHHEDSLNTAANLGLMEDSGEQKMFFMRLP-SVPLASTPTENLETRPNIKGPVEKK 190
Query: 176 STSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFV 235
+ LK LPEG+MGK+LVY+SG VKMK+G+ L+DVSPG F
Sbjct: 191 TVD-----------------LKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFA 233
Query: 236 QEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKM 274
Q+V +N +K+CC +G++ K A++TPDI+ +L + +
Sbjct: 234 QDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSILKDIENI 272
>AT4G25180.1 | chr4:12911746-12913907 REVERSE LENGTH=312
Length = 311
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 116/199 (58%), Gaps = 20/199 (10%)
Query: 79 EYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQD-GELTTAEELGLMH- 136
+YVEPWDY +S YP LPLR+P SGD E+L++EEFGE + D + +AEELGL
Sbjct: 128 DYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSV 187
Query: 137 RSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKL 196
+ K Q+ F++P LP+ KQ T S +E +G P
Sbjct: 188 QHSKKQMFIFKIPDCLPVVKQTTGAT------------TKRSVREYSSGISNP------F 229
Query: 197 KDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISK 256
+ LPEGFMGK+LVY+SG VK+K+GD+LFDVSPG +V AI+ + ++C +G +K
Sbjct: 230 EGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAK 289
Query: 257 RAIVTPDIEHLLDSFDKME 275
VTPD+E LL+ ME
Sbjct: 290 FVTVTPDVESLLNPASDME 308
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,167,656
Number of extensions: 269739
Number of successful extensions: 605
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)