Os04g0390500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Iron-phytosiderophore transporter protein yellow stripe 1.
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Os04g0390500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Iron-phytosiderophore transporter protein yellow stripe 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.85 | 0.273 | 13.1 | -0.246 | 0.696 | 0.576 | 0.593 | 1.2 | 0.136 | 4.74 | 5.867 | 4248 | -- | -- |
| 33.31 | 0.269 | 13.1 | -0.0635 | 0.659 | 0.648 | 0.72 | -- | 0.246 | 4.59 | 6.506 | 8465 | -- | -- |
| 34.69 | 0.274 | 13.1 | -0.286 | 0.711 | 0.505 | -- | 1.25 | 0.128 | 5.01 | 4.871 | 4292 | -- | -- |
| 33.98 | 0.271 | 13.1 | -0.0606 | 0.67 | 0.637 | -- | -- | 0.247 | 4.84 | 6.449 | 8488 | -- | -- |
| 36.51 | 0.281 | 13.1 | -0.13 | -- | 1.12 | -- | 1.58 | 0.141 | -- | 6.289 | 2106 | -- | -- |
| 43.9 | 0.311 | 13.1 | -0.0673 | 0.676 | -- | 0.423 | -- | 0.0453 | 5.31 | -- | -- | -- | -- |
| 44.34 | 0.312 | 13.1 | -0.0664 | 0.68 | -- | -- | -- | 0.0435 | 5.39 | -- | -- | -- | -- |
| 38.65 | 0.29 | 13.1 | -0.000426 | -- | 1.15 | -- | -- | 0.166 | -- | 5.072 | 2145 | -- | -- |
| 34.08 | 0.272 | 13.1 | -- | 0.685 | 0.653 | -- | -- | 0.259 | 4.89 | 6.154 | 8501 | -- | -- |
| 68.4 | 0.386 | 13.2 | -0.0434 | -- | -- | -- | -- | 0.0603 | -- | -- | -- | -- | -- |
| 44.45 | 0.312 | 13.1 | -- | 0.679 | -- | -- | -- | 0.0509 | 5.39 | -- | -- | -- | -- |
| 38.64 | 0.29 | 13.1 | -- | -- | 1.16 | -- | -- | 0.167 | -- | 5.07 | 2148 | -- | -- |
| 68.45 | 0.386 | 13.1 | -- | -- | -- | -- | -- | 0.0651 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 17 |
| 13 | 31.91 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 25 | 31.95 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 27 | 31.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 29 | 31.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 42 | 32.03 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 70 | 32.14 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 93 | 32.15 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 94 | 32.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 96 | 32.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 16 |
| 104 | 32.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 110 | 32.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 111 | 32.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 164 | 32.24 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 197 | 32.31 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 204 | 32.32 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 207 | 32.33 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 214 | 32.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 226 | 32.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 228 | 32.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 230 | 32.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 232 | 32.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 19 |
| 240 | 32.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 243 | 32.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 244 | 32.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 263 | 32.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 266 | 32.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 269 | 32.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 270 | 32.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 293 | 32.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 305 | 32.44 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 306 | 32.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 309 | 32.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 310 | 32.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 317 | 32.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 326 | 32.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 340 | 32.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 360 | 32.48 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 377 | 32.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 410 | 32.51 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 420 | 32.52 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 422 | 32.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 435 | 32.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 446 | 32.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 447 | 32.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 454 | 32.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 22 |
| 457 | 32.55 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 470 | 32.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 490 | 32.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 498 | 32.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 500 | 32.59 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 502 | 32.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 512 | 32.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 528 | 32.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 531 | 32.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 537 | 32.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 543 | 32.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 555 | 32.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 595 | 32.66 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 603 | 32.67 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 611 | 32.68 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 649 | 32.70 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 696 | 32.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 707 | 32.75 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 708 | 32.75 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 745 | 32.77 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 751 | 32.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 760 | 32.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 771 | 32.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 780 | 32.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 783 | 32.79 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 829 | 32.81 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 10 | NA |
| 833 | 32.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 836 | 32.81 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 840 | 32.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 844 | 32.82 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 10 | NA |
| 858 | 32.82 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 862 | 32.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 864 | 32.83 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 896 | 32.85 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 898 | 32.85 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 18 |
| 901 | 32.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 949 | 32.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 979 | 32.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 989 | 32.89 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 992 | 32.89 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 4 | 21 |