BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0390500 Os04g0390500|AK064828
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27020.1 | chr3:9961623-9964461 REVERSE LENGTH=677 404 e-113
AT5G41000.1 | chr5:16420910-16423697 FORWARD LENGTH=671 387 e-108
AT4G24120.1 | chr4:12524581-12527023 FORWARD LENGTH=674 309 9e-85
AT1G65730.1 | chr1:24442639-24446122 FORWARD LENGTH=689 302 1e-82
AT3G17650.1 | chr3:6034307-6037087 FORWARD LENGTH=715 297 4e-81
AT1G48370.1 | chr1:17874560-17877256 FORWARD LENGTH=725 295 1e-80
AT5G53550.1 | chr5:21756081-21758776 FORWARD LENGTH=676 295 2e-80
AT5G24380.1 | chr5:8324098-8326525 FORWARD LENGTH=665 291 3e-79
AT5G45450.1 | chr5:18415161-18415811 FORWARD LENGTH=217 241 3e-64
>AT3G27020.1 | chr3:9961623-9964461 REVERSE LENGTH=677
Length = 676
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/232 (80%), Positives = 220/232 (94%)
Query: 25 DWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSP 84
DW+LASTYGKIGLFI AS+VG GGVIAGLAACGVMMSIVSTAADLMQDF+TGYLTLSS
Sbjct: 442 DWSLASTYGKIGLFIIASVVGSDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSA 501
Query: 85 RSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSAL 144
+SMFVSQL+GT +GC+IAPLTFWL+WTAFDIG+P+G +KAPYAVI+REM+ILG+EGF+ L
Sbjct: 502 KSMFVSQLVGTAMGCVIAPLTFWLFWTAFDIGDPNGPYKAPYAVIFREMAILGIEGFAEL 561
Query: 145 PQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVIL 204
P+HCLA+C FF+AA+++NLLRD+TP +S+FIP+PMAMAVPFYIGAYFAIDMFVGTVIL
Sbjct: 562 PKHCLALCYGFFIAALIVNLLRDITPPKISQFIPIPMAMAVPFYIGAYFAIDMFVGTVIL 621
Query: 205 FVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPS 256
FVWER+NRK++EDFAGA+ASGLICGDGIW++PSAILSI+RI+PP+CMYF PS
Sbjct: 622 FVWERINRKDAEDFAGAVASGLICGDGIWTIPSAILSILRINPPICMYFGPS 673
>AT5G41000.1 | chr5:16420910-16423697 FORWARD LENGTH=671
Length = 670
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 177/233 (75%), Positives = 217/233 (93%)
Query: 24 ADWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSS 83
D ++ STYGK GLFI AS+VG +GGVIAGLAACG+MMSIVSTAADLMQDF+TGYLTLSS
Sbjct: 438 TDMSMPSTYGKTGLFIVASIVGNNGGVIAGLAACGIMMSIVSTAADLMQDFKTGYLTLSS 497
Query: 84 PRSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSA 143
+SMFV+QL+GT +GCIIAPLTFWL+WTAFDIG+PDG++KAPYAVIYREM+ILGVEGF+
Sbjct: 498 AKSMFVTQLLGTAMGCIIAPLTFWLFWTAFDIGDPDGLYKAPYAVIYREMAILGVEGFAK 557
Query: 144 LPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVI 203
LP+HCLA+C FF+AA+++NL+RD+TP +SK IPLPMAMA PFYIGAYFAIDMFVGTVI
Sbjct: 558 LPKHCLALCCGFFIAALIVNLIRDMTPPKISKLIPLPMAMAGPFYIGAYFAIDMFVGTVI 617
Query: 204 LFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPS 256
+ VWER+N+K+++D++GA+ASGLICGDGIW++PSAILSI+RI+PP+CMYF+PS
Sbjct: 618 MLVWERMNKKDADDYSGAVASGLICGDGIWTIPSAILSILRINPPICMYFRPS 670
>AT4G24120.1 | chr4:12524581-12527023 FORWARD LENGTH=674
Length = 673
Score = 309 bits (792), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 190/232 (81%)
Query: 25 DWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSP 84
D N+A YGKIGLF+ A++ GR GV+AGLA CG++ S+VS + LMQDF+T + T++SP
Sbjct: 442 DINMAYNYGKIGLFVIAAVTGRENGVVAGLAGCGLIKSVVSVSCILMQDFKTAHYTMTSP 501
Query: 85 RSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSAL 144
++MF SQ+IGT +GCI+ PL+F+L++ AFDIGNP+G FKAPYA+IYR M+ILGV+GFSAL
Sbjct: 502 KAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNPNGEFKAPYALIYRNMAILGVQGFSAL 561
Query: 145 PQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVIL 204
P HCL +C FF A+L+N++RD+TP + +F+PLP AMAVPF +GAYFAIDM VGT+I+
Sbjct: 562 PLHCLQMCYGFFGFAVLVNVVRDLTPAKIGRFMPLPTAMAVPFLVGAYFAIDMCVGTLIV 621
Query: 205 FVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPS 256
FVWE++NRK++E A+ASGLICG+G+W++P+A+L++ + PP+CM F S
Sbjct: 622 FVWEKMNRKKAEFMVPAVASGLICGEGLWTLPAAVLALAGVKPPICMKFLAS 673
>AT1G65730.1 | chr1:24442639-24446122 FORWARD LENGTH=689
Length = 688
Score = 302 bits (773), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 188/231 (81%), Gaps = 2/231 (0%)
Query: 25 DWNLASTYGKIGLFIFASLVGRS-GGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSS 83
DW+LASTYGK+ +F + G S GGV+AGLAACGVMM+IVSTA+DLMQDF+TGY+TL+S
Sbjct: 442 DWSLASTYGKLAIFTIGAWAGASNGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLAS 501
Query: 84 PRSMFVSQLIGTTLGCIIAPLTFWLYWTAF-DIGNPDGMFKAPYAVIYREMSILGVEGFS 142
PRSMF+SQ IGT +GC+I+P FWL++ AF D G P + APYA++YR MSILGVEGFS
Sbjct: 502 PRSMFLSQAIGTAMGCVISPCVFWLFYKAFPDFGQPGTAYPAPYALVYRNMSILGVEGFS 561
Query: 143 ALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTV 202
ALP+HCL +C +FF AA+++N +RD ++FIPLPMAMA+PFY+G YF IDM +G++
Sbjct: 562 ALPKHCLMLCYIFFAAAVIVNGIRDALGPKWARFIPLPMAMAIPFYLGGYFTIDMCLGSL 621
Query: 203 ILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYF 253
ILF+W ++N+ +++ ++ A+ASGLICG+GIW++PS+IL++ + P+CM F
Sbjct: 622 ILFIWRKLNKPKADAYSSAVASGLICGEGIWTLPSSILALAGVKAPICMKF 672
>AT3G17650.1 | chr3:6034307-6037087 FORWARD LENGTH=715
Length = 714
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 189/237 (79%), Gaps = 2/237 (0%)
Query: 25 DWNLASTYGKIGLFIFASLVG-RSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSS 83
DW+LASTYGK+ +F + G GG++AGLAACGVMM+IVSTA+DL QDF+TGYLTLSS
Sbjct: 467 DWSLASTYGKLAIFTIGAWAGSEHGGMLAGLAACGVMMNIVSTASDLTQDFKTGYLTLSS 526
Query: 84 PRSMFVSQLIGTTLGCIIAPLTFWLYWTAFD-IGNPDGMFKAPYAVIYREMSILGVEGFS 142
P+SMFVSQ+IGT +GC+++P FWL++ AFD +G P+ + AP+A +YR M+ LGVEG +
Sbjct: 527 PKSMFVSQVIGTAMGCVVSPCVFWLFYKAFDDLGLPNTEYPAPFATVYRSMAKLGVEGVA 586
Query: 143 ALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTV 202
+LP+ CL +C FF AIL+N+++D + +FIPLPMAMA+PF++G YFAIDM VG++
Sbjct: 587 SLPRECLVLCYAFFGVAILVNIVKDSLHSNWGRFIPLPMAMAIPFFLGPYFAIDMCVGSL 646
Query: 203 ILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPSLTS 259
ILF+WERV+ ++E F A+ASGLICGDGIWS+PS++L+I ++PP+CM F S T+
Sbjct: 647 ILFIWERVDAAKAEAFGTAVASGLICGDGIWSLPSSVLAIAGVNPPVCMKFLSSATN 703
>AT1G48370.1 | chr1:17874560-17877256 FORWARD LENGTH=725
Length = 724
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 188/237 (79%), Gaps = 2/237 (0%)
Query: 25 DWNLASTYGKIGLFIFASLVGR-SGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSS 83
DW+LASTYGK+ +F + G GG++AGLAACGVMM+IVSTA+DL QDF+TGYLTLSS
Sbjct: 477 DWSLASTYGKLAIFTIGAWAGSDHGGLLAGLAACGVMMNIVSTASDLTQDFKTGYLTLSS 536
Query: 84 PRSMFVSQLIGTTLGCIIAPLTFWLYWTAFD-IGNPDGMFKAPYAVIYREMSILGVEGFS 142
PR+MFVSQ+IGT +GC+++P FWL++ AFD +G P+ + AP+A +YR M+ LGVEG S
Sbjct: 537 PRAMFVSQVIGTAMGCLVSPCVFWLFYKAFDDLGLPNSEYPAPFATVYRSMAKLGVEGVS 596
Query: 143 ALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTV 202
+LP+ CL +C VFF AILINL++D +F+PLPMAMA+PF++G YFAIDM VG+
Sbjct: 597 SLPRDCLMLCYVFFGVAILINLIKDCLGNRWGRFVPLPMAMAIPFFLGPYFAIDMCVGSF 656
Query: 203 ILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPSLTS 259
ILFVWER++ ++E FA A+ASGLICGDGIW++PS++L+I + PP+CM F + T+
Sbjct: 657 ILFVWERLDAPKAEAFATAVASGLICGDGIWTLPSSVLAIAGVKPPICMKFLSAATN 713
>AT5G53550.1 | chr5:21756081-21758776 FORWARD LENGTH=676
Length = 675
Score = 295 bits (755), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 183/244 (75%)
Query: 16 SNCANDLPADWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFR 75
SN D N+A YGK+ LFI A++ G+ GV+AGL CG++ SIVS ++DLM DF+
Sbjct: 431 SNAYGAGLTDMNMAYNYGKVALFILAAMAGKQNGVVAGLVGCGLIKSIVSISSDLMHDFK 490
Query: 76 TGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSI 135
TG+LTL+SPRSM VSQ IGT +GC++APLTF+L++ AFD+GN +G +KAPYA++YR M+I
Sbjct: 491 TGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNQEGEYKAPYALVYRNMAI 550
Query: 136 LGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAI 195
LGVEGFSALPQHCL +C FF A+ NL+RD P + ++PLPMAMAVPF +G YFAI
Sbjct: 551 LGVEGFSALPQHCLQLCYGFFAFAVAANLVRDRLPDKIGNWVPLPMAMAVPFLVGGYFAI 610
Query: 196 DMFVGTVILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKP 255
DM VG++I+F W +R ++ A+ASGLICGDG+W +PS++L++ + PP+CM F P
Sbjct: 611 DMCVGSLIVFAWNMRDRVKAGLMVPAVASGLICGDGLWILPSSVLALAGVRPPICMGFMP 670
Query: 256 SLTS 259
S S
Sbjct: 671 SKYS 674
>AT5G24380.1 | chr5:8324098-8326525 FORWARD LENGTH=665
Length = 664
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 183/229 (79%)
Query: 25 DWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSP 84
D N+A YGK LF+ A+L G++ GV+AG+ ACG++ SIVS +ADLM DF+TG+LT +SP
Sbjct: 432 DMNMAYNYGKAALFVMAALAGKNDGVVAGMVACGLIKSIVSVSADLMHDFKTGHLTQTSP 491
Query: 85 RSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSAL 144
RSM V+Q IGT +GC++APLTF+L++ AFD+GN +G +KAPYA+IYR M+I+GV+G SAL
Sbjct: 492 RSMLVAQAIGTAIGCVVAPLTFFLFYKAFDVGNQNGEYKAPYAMIYRNMAIIGVQGPSAL 551
Query: 145 PQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVIL 204
P+HCL +C FF A+ NL RD+ P K+IPLPMAMAVPF +G FAIDM +G++++
Sbjct: 552 PKHCLELCYGFFAFAVAANLARDLLPDKPGKWIPLPMAMAVPFLVGGSFAIDMCIGSLVV 611
Query: 205 FVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYF 253
+VW++VNRK+++ A+ASGLICGDG+W +PS++L++ ++ PP+CM F
Sbjct: 612 YVWKKVNRKKADVMVPAVASGLICGDGLWILPSSLLALAKVRPPICMNF 660
>AT5G45450.1 | chr5:18415161-18415811 FORWARD LENGTH=217
Length = 216
Score = 241 bits (615), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 158/211 (74%), Gaps = 7/211 (3%)
Query: 50 VIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLY 109
++AGLA CG MM+IVS A+DL QDF+TGYLTLSSP+SMFVSQ+IGT +GC+++P FWL+
Sbjct: 1 MLAGLATCGFMMNIVSRASDLTQDFKTGYLTLSSPKSMFVSQVIGTAMGCVVSPCVFWLF 60
Query: 110 WTAFD-IGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDV 168
+ AFD +G P+ + P+A +YR M+ LGV P+ CL +C VFF AIL+N+++D
Sbjct: 61 YKAFDDLGLPNTEYHTPFATVYRSMAKLGV------PRECLVLCYVFFGVAILVNIVKDS 114
Query: 169 TPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNRKESEDFAGAIASGLIC 228
+FIPL MAMA+PF++G YFAI+M VG++ILF+WERV+ ++E F A+AS LIC
Sbjct: 115 LHSKWGRFIPLSMAMAIPFFLGLYFAIEMCVGSLILFIWERVDAAKAEAFGTAVASCLIC 174
Query: 229 GDGIWSVPSAILSIMRIDPPMCMYFKPSLTS 259
DG WS PS++L++ ++PP+CM F S T+
Sbjct: 175 RDGTWSKPSSVLAVAAVNPPVCMKFLSSQTN 205
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,523,332
Number of extensions: 213744
Number of successful extensions: 562
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 9
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)