Os04g0387400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Floral homeotic protein APETALA1 (MADS C).
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Os04g0387400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Floral homeotic protein APETALA1 (MADS C).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.73 | 0.354 | 11.3 | 0.0509 | 0.0301 | 0.154 | 1.14 | 1.66 | -0.216 | 11.7 | 3.04 | 830 | -- | -- |
| 60.11 | 0.361 | 11.3 | 0.0225 | 0.1 | 0.238 | 0.612 | -- | -0.203 | 11.3 | 2.926 | 703 | -- | -- |
| 59.51 | 0.359 | 11.3 | 0.0628 | 0.00644 | 0.344 | -- | 1.6 | -0.253 | 12 | 3 | 1700 | -- | -- |
| 61.55 | 0.365 | 11.3 | 0.0649 | 0.108 | 0.281 | -- | -- | -0.206 | 12.4 | 2.971 | 711 | -- | -- |
| 59.3 | 0.359 | 11.3 | 0.084 | -- | 0.309 | -- | 1.98 | -0.232 | -- | 3.019 | 1704 | -- | -- |
| 61.38 | 0.367 | 11.3 | -0.0344 | 0.0226 | -- | 0.684 | -- | -0.19 | 12.6 | -- | -- | -- | -- |
| 62.93 | 0.371 | 11.3 | -0.00627 | 0.0957 | -- | -- | -- | -0.185 | 17.7 | -- | -- | -- | -- |
| 62.14 | 0.367 | 11.3 | 0.0626 | -- | 0.244 | -- | -- | -0.211 | -- | 2.61 | 701 | -- | -- |
| 61.65 | 0.366 | 11.3 | -- | 0.0994 | 0.257 | -- | -- | -0.21 | 12.7 | 2.912 | 711 | -- | -- |
| 63.41 | 0.372 | 11.3 | -0.00931 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 62.93 | 0.371 | 11.3 | -- | 0.0958 | -- | -- | -- | -0.184 | 17.7 | -- | -- | -- | -- |
| 62.1 | 0.367 | 11.3 | -- | -- | 0.188 | -- | -- | -0.204 | -- | 3 | 588 | -- | -- |
| 63.41 | 0.372 | 11.3 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 4 | 53.26 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 5 | 53.46 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 6 | 53.60 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 9 | 53.65 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 17 | 53.86 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 19 | 53.88 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 20 | 53.93 | wind | 1.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 21 | 53.93 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 23 | 53.94 | wind | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 29 | 53.98 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 31 | 53.99 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 44 | 54.06 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 86 | 54.46 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 88 | 54.47 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 91 | 54.48 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 95 | 54.49 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 97 | 54.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 116 | 54.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 120 | 54.60 | wind | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 126 | 54.65 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 188 | 54.87 | wind | 1.0 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 190 | 54.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 191 | 54.89 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 196 | 54.89 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 210 | 54.92 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 211 | 54.92 | wind | 1.0 | 720 | < th | dose independent | rect. | 12 | 13 |
| 213 | 54.93 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 235 | 54.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 240 | 54.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 241 | 54.97 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 275 | 55.05 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 277 | 55.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 281 | 55.08 | wind | 3.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 287 | 55.08 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 311 | 55.11 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 326 | 55.13 | wind | 1.0 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 338 | 55.16 | wind | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 348 | 55.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 352 | 55.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 354 | 55.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 355 | 55.18 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 356 | 55.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 367 | 55.20 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 397 | 55.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 402 | 55.24 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 404 | 55.24 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 427 | 55.24 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 430 | 55.25 | wind | 1.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 448 | 55.26 | wind | 1.0 | 720 | > th | dose independent | rect. | 9 | 18 |
| 473 | 55.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 482 | 55.29 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 493 | 55.31 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 499 | 55.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 503 | 55.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 508 | 55.32 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 536 | 55.33 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 566 | 55.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 578 | 55.37 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 592 | 55.38 | wind | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 623 | 55.38 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 645 | 55.39 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 655 | 55.39 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 672 | 55.40 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 690 | 55.42 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 735 | 55.45 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 751 | 55.45 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 755 | 55.46 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 758 | 55.46 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 772 | 55.46 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 779 | 55.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 782 | 55.47 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 837 | 55.49 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 845 | 55.50 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 853 | 55.50 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 856 | 55.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 918 | 55.53 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 919 | 55.53 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 963 | 55.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 965 | 55.54 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 970 | 55.54 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 979 | 55.55 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 13 |