BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0387400 Os04g0387400|Os04g0387400
(73 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G30260.1 | chr3:11909119-11912880 FORWARD LENGTH=250 61 1e-10
AT4G37940.1 | chr4:17835695-17838621 REVERSE LENGTH=229 60 3e-10
AT2G14210.1 | chr2:6018841-6023585 FORWARD LENGTH=235 60 3e-10
AT1G69120.1 | chr1:25982576-25986102 REVERSE LENGTH=257 60 3e-10
AT5G60910.1 | chr5:24502736-24506013 REVERSE LENGTH=243 59 5e-10
AT1G26310.1 | chr1:9100330-9103510 REVERSE LENGTH=256 59 7e-10
AT5G23260.2 | chr5:7836442-7838340 FORWARD LENGTH=253 58 1e-09
AT2G45650.1 | chr2:18804453-18806291 FORWARD LENGTH=253 57 2e-09
AT3G02310.1 | chr3:464554-466687 REVERSE LENGTH=251 57 2e-09
AT5G15800.2 | chr5:5151594-5153767 REVERSE LENGTH=263 57 2e-09
AT1G24260.2 | chr1:8593790-8595862 REVERSE LENGTH=252 57 2e-09
AT1G71692.1 | chr1:26952903-26954939 REVERSE LENGTH=212 57 3e-09
AT3G61120.1 | chr3:22618414-22620466 REVERSE LENGTH=245 56 5e-09
AT3G57230.1 | chr3:21177710-21180671 FORWARD LENGTH=241 55 7e-09
AT2G03710.1 | chr2:1129622-1131628 FORWARD LENGTH=259 54 1e-08
AT5G13790.1 | chr5:4449128-4450802 REVERSE LENGTH=269 53 3e-08
AT1G31140.2 | chr1:11118031-11119673 FORWARD LENGTH=216 53 3e-08
AT2G22630.1 | chr2:9618372-9621641 FORWARD LENGTH=228 52 5e-08
AT3G54340.1 | chr3:20119428-20121087 REVERSE LENGTH=233 52 5e-08
AT3G58780.3 | chr3:21739150-21741766 FORWARD LENGTH=274 52 5e-08
AT2G42830.2 | chr2:17820602-17823806 FORWARD LENGTH=249 52 5e-08
AT4G18960.1 | chr4:10383917-10388272 FORWARD LENGTH=253 52 6e-08
AT1G28460.1 | chr1:10006230-10006778 FORWARD LENGTH=183 52 6e-08
AT5G51870.3 | chr5:21085635-21087923 REVERSE LENGTH=220 51 1e-07
AT3G57390.1 | chr3:21233910-21235735 FORWARD LENGTH=257 51 1e-07
AT4G09960.3 | chr4:6236713-6240494 REVERSE LENGTH=257 51 1e-07
AT2G45660.1 | chr2:18807799-18810193 REVERSE LENGTH=215 50 2e-07
AT2G22540.1 | chr2:9580417-9583603 FORWARD LENGTH=241 50 2e-07
AT4G11880.1 | chr4:7143512-7147108 FORWARD LENGTH=222 50 3e-07
AT5G10140.1 | chr5:3173724-3179339 REVERSE LENGTH=197 50 3e-07
AT5G62165.1 | chr5:24965075-24968437 FORWARD LENGTH=211 50 3e-07
AT5G20240.1 | chr5:6829203-6831208 FORWARD LENGTH=209 50 3e-07
AT5G51860.1 | chr5:21081844-21084126 REVERSE LENGTH=212 49 5e-07
AT4G22950.1 | chr4:12023946-12027421 REVERSE LENGTH=220 49 6e-07
AT4G24540.1 | chr4:12671160-12673645 REVERSE LENGTH=221 45 5e-06
>AT3G30260.1 | chr3:11909119-11912880 FORWARD LENGTH=250
Length = 249
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV LRRIE+++RR + F KR GL KK +E++VLCDA V +V S G
Sbjct: 3 RGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKG 52
>AT4G37940.1 | chr4:17835695-17838621 REVERSE LENGTH=229
Length = 228
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++V++RI+D R + F KR GL KK +ELA+LCDA VG ++ S +G
Sbjct: 3 RGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTG 52
>AT2G14210.1 | chr2:6018841-6023585 FORWARD LENGTH=235
Length = 234
Score = 59.7 bits (143), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++V+RRI++ R + F KR +GL KK +EL++LCDA VG ++ S +G
Sbjct: 3 RGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTG 52
>AT1G69120.1 | chr1:25982576-25986102 REVERSE LENGTH=257
Length = 256
Score = 59.7 bits (143), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR AGL KK E++VLCDA V VV S G
Sbjct: 3 RGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKG 52
>AT5G60910.1 | chr5:24502736-24506013 REVERSE LENGTH=243
Length = 242
Score = 58.9 bits (141), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR +GL KK E++VLCDA V +V S G
Sbjct: 3 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKG 52
>AT1G26310.1 | chr1:9100330-9103510 REVERSE LENGTH=256
Length = 255
Score = 58.5 bits (140), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR GL KK +E++VLCDA V +V S G
Sbjct: 3 RGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKG 52
>AT5G23260.2 | chr5:7836442-7838340 FORWARD LENGTH=253
Length = 252
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ +++IE++ R + F KR GL KK EL++LCDAH+G +V S +G
Sbjct: 3 RGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATG 52
>AT2G45650.1 | chr2:18804453-18806291 FORWARD LENGTH=253
Length = 252
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV ++RIE+++ R + F KR GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRG 52
>AT3G02310.1 | chr3:464554-466687 REVERSE LENGTH=251
Length = 250
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR GL KK EL+VLCDA V +V S G
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRG 52
>AT5G15800.2 | chr5:5151594-5153767 REVERSE LENGTH=263
Length = 262
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRG 52
>AT1G24260.2 | chr1:8593790-8595862 REVERSE LENGTH=252
Length = 251
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGRV L+RIE+++ R + F KR GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRG 52
>AT1G71692.1 | chr1:26952903-26954939 REVERSE LENGTH=212
Length = 211
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 3 SRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
+RG++ L+RIE+ V R + F KR GL KK +EL+VLCDA +G V+ S G
Sbjct: 2 ARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQG 52
>AT3G61120.1 | chr3:22618414-22620466 REVERSE LENGTH=245
Length = 244
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG+V ++RIE+++ R + F KR +GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGG 52
>AT3G57230.1 | chr3:21177710-21180671 FORWARD LENGTH=241
Length = 240
Score = 55.1 bits (131), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RI + R + F KR GL KK +ELA+LCDA VG ++ S +G
Sbjct: 3 RGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTG 52
>AT2G03710.1 | chr2:1129622-1131628 FORWARD LENGTH=259
Length = 258
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG+V L+RIE+++ R + F KR GL KK EL+VLCDA + ++ S G
Sbjct: 3 RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRG 52
>AT5G13790.1 | chr5:4449128-4450802 REVERSE LENGTH=269
Length = 268
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR +GL KK EL+VLCDA V +V S SG
Sbjct: 3 RGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSG 52
>AT1G31140.2 | chr1:11118031-11119673 FORWARD LENGTH=216
Length = 215
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSGDDANPHHFAA 63
+G+ V+++IE++++R + F KR L KK EL+VLCD H+G ++ S S + F +
Sbjct: 3 KGKRVIKKIEEKIKRQVTFAKRKKSLIKKAYELSVLCDVHLGLIIFSHSN---RLYDFCS 59
Query: 64 PATHLELLF 72
+T +E L
Sbjct: 60 NSTSMENLI 68
>AT2G22630.1 | chr2:9618372-9621641 FORWARD LENGTH=228
Length = 227
Score = 52.4 bits (124), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLS 50
RG++V+++I+D R + F KR GL KK +ELA+LCDA V ++ S
Sbjct: 3 RGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFS 49
>AT3G54340.1 | chr3:20119428-20121087 REVERSE LENGTH=233
Length = 232
Score = 52.4 bits (124), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 3 SRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSGDDANPHHFA 62
+RG++ ++RIE++ R + + KR GL KK EL VLCDA V ++ S S H +
Sbjct: 2 ARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSN---KLHEYI 58
Query: 63 APAT 66
+P T
Sbjct: 59 SPNT 62
>AT3G58780.3 | chr3:21739150-21741766 FORWARD LENGTH=274
Length = 273
Score = 52.0 bits (123), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR GL KK EL+VLCDA V V+ S G
Sbjct: 18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRG 67
>AT2G42830.2 | chr2:17820602-17823806 FORWARD LENGTH=249
Length = 248
Score = 52.0 bits (123), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR GL KK EL+VLCDA V V+ S G
Sbjct: 18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRG 67
>AT4G18960.1 | chr4:10383917-10388272 FORWARD LENGTH=253
Length = 252
Score = 52.0 bits (123), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR GL KK EL+VLCDA V +V S G
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68
>AT1G28460.1 | chr1:10006230-10006778 FORWARD LENGTH=183
Length = 182
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSGDDANPHHFAA 63
+ ++ +++IE R + F KRL G+ K+ EL++LC V F+ SCSG P+ F +
Sbjct: 9 KQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSG---KPYTFGS 65
Query: 64 PA 65
P+
Sbjct: 66 PS 67
>AT5G51870.3 | chr5:21085635-21087923 REVERSE LENGTH=220
Length = 219
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ +++IE+ R + F KR +GL KK EL+VLCDA V +V S SG
Sbjct: 3 RGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSG 52
>AT3G57390.1 | chr3:21233910-21235735 FORWARD LENGTH=257
Length = 256
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RGR+ +++IE+ R + F KR GL KK +EL++LCDA V ++ S +G
Sbjct: 3 RGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTG 52
>AT4G09960.3 | chr4:6236713-6240494 REVERSE LENGTH=257
Length = 256
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR GL KK EL+VLCDA V +V S G
Sbjct: 29 RGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRG 78
>AT2G45660.1 | chr2:18807799-18810193 REVERSE LENGTH=215
Length = 214
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG+ ++RIE+ R + F KR GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKG 52
>AT2G22540.1 | chr2:9580417-9583603 FORWARD LENGTH=241
Length = 240
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 3 SRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
+R ++ +R+I++ R + F KR GL KK EEL+VLCDA V ++ S +G
Sbjct: 2 AREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTG 52
>AT4G11880.1 | chr4:7143512-7147108 FORWARD LENGTH=222
Length = 221
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG+ ++RIE+ R + F KR GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRG 52
>AT5G10140.1 | chr5:3173724-3179339 REVERSE LENGTH=197
Length = 196
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1 MGSRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
MG R ++ ++RIE++ R + F KR GL +K +L+VLCDA V +V+S SG
Sbjct: 1 MG-RKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASG 52
>AT5G62165.1 | chr5:24965075-24968437 FORWARD LENGTH=211
Length = 210
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ +++IE+ R + F KR GL KK EL+VLCDA + ++ S G
Sbjct: 3 RGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRG 52
>AT5G20240.1 | chr5:6829203-6831208 FORWARD LENGTH=209
Length = 208
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ ++RIE+ R + F KR GL KK +E+ VLCDA V ++ + +G
Sbjct: 3 RGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNG 52
>AT5G51860.1 | chr5:21081844-21084126 REVERSE LENGTH=212
Length = 211
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
RG++ +++IE+ R + F KR +GL KK EL+VLCDA V ++ S G
Sbjct: 3 RGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKG 52
>AT4G22950.1 | chr4:12023946-12027421 REVERSE LENGTH=220
Length = 219
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 4 RGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLS 50
RG+ ++RIE+ R + F KR GL KK EL+VLCDA V V+ S
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFS 49
>AT4G24540.1 | chr4:12671160-12673645 REVERSE LENGTH=221
Length = 220
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 3 SRGRVVLRRIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
+R ++ +++I++ R + F KR G+ KK +EL+VLCDA V ++ S +G
Sbjct: 2 AREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATG 52
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,630,988
Number of extensions: 54266
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 35
Length of query: 73
Length of database: 11,106,569
Length adjustment: 45
Effective length of query: 28
Effective length of database: 9,872,849
Effective search space: 276439772
Effective search space used: 276439772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)