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Os04g0382100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SWIB/MDM2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0197) R2 : 0.0202
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.127 (0.0414) R2dN8 : 0.026 R2N8 : 0.0202
σ : 0.371
deviance : 63.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.26 0.305 10.9 1.14 0.37 -0.334 0.341 6.16 0.0466 11.6 27.54 628 -- --
45.07 0.315 11 0.47 0.272 0.478 0.0222 -- -0.07 10.5 26.99 4718 -- --
42.66 0.304 10.9 1.11 0.37 -0.328 -- 6.31 0.0292 11.3 27.93 610 -- --
44.93 0.314 11 0.458 0.254 0.463 -- -- -0.111 9.78 24.57 2006 -- --
50.23 0.332 11 0.447 -- 0.628 -- -0.239 -0.0644 -- 27.93 610 -- --
48.03 0.325 11 0.52 0.349 -- 0.252 -- -0.0654 12.1 -- -- -- --
48.28 0.325 11 0.53 0.349 -- -- -- -0.0648 11.8 -- -- -- --
48.63 0.326 11 0.444 -- 0.543 -- -- -0.118 -- 24.57 2006 -- --
50.13 0.332 11 -- 0.244 0.576 -- -- -0.19 8.96 23.6 4532 -- --
55.94 0.349 11 0.519 -- -- -- -- -0.0693 -- -- -- -- --
55.67 0.349 11 -- 0.343 -- -- -- -0.124 11.8 -- -- -- --
51.89 0.337 11 -- -- 0.855 -- -- -0.223 -- 7.189 47520 -- --
63.06 0.371 11 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.62 atmosphere 995 14400 > th dose independent rect. 18 2
2 40.72 temperature 30 720 < th dose independent sin 7 NA
3 40.82 temperature 30 720 > th dose independent rect. 8 6
33 40.93 temperature 30 720 < th dose independent rect. 21 17
35 41.01 temperature 30 720 > th dose independent sin 6 NA
39 41.11 temperature 30 720 < th dose independent rect. 19 20
43 41.21 temperature 30 720 < th dose independent rect. 23 16
50 41.48 temperature 25 4320 > th dose independent rect. 24 1
51 41.53 atmosphere 995 14400 < th dose independent rect. 17 1
53 41.53 atmosphere 995 14400 < th dose dependent rect. 17 1
55 41.54 temperature 25 270 > th dose dependent sin 12 NA
70 41.57 temperature 25 4320 < th dose independent rect. 24 1
102 41.71 temperature 10 270 > th dose dependent rect. 4 21
115 41.79 temperature 25 270 > th dose dependent rect. 16 16
118 41.80 temperature 25 90 > th dose dependent rect. 17 10
123 41.82 temperature 25 90 > th dose dependent rect. 17 13
125 41.83 temperature 30 720 < th dose independent rect. 17 22
148 41.86 temperature 25 720 > th dose dependent rect. 23 18
204 42.06 temperature 25 720 > th dose dependent rect. 5 12
210 42.08 temperature 25 90 > th dose independent rect. 16 10
213 42.09 atmosphere 1000 270 > th dose independent sin 1 NA
215 42.09 temperature 25 4320 > th dose dependent rect. 24 1
222 42.11 temperature 25 90 > th dose independent rect. 16 8
223 42.11 temperature 25 720 > th dose dependent rect. 11 6
237 42.16 atmosphere 995 14400 > th dose independent rect. 12 8
241 42.17 temperature 20 720 > th dose independent rect. 5 19
242 42.17 temperature 25 720 > th dose dependent rect. 13 4
243 42.17 temperature 20 10 > th dose dependent rect. 17 9
252 42.20 atmosphere 995 14400 > th dose independent rect. 10 10
264 42.23 temperature 25 270 < th dose independent rect. 15 14
300 42.28 temperature 30 720 < th dose independent rect. 3 8
341 42.32 temperature 30 720 < th dose independent rect. 7 5
425 42.44 atmosphere 1000 10 > th dose independent sin 23 NA
436 42.46 temperature 30 270 < th dose independent rect. 9 10
437 42.46 temperature 25 720 > th dose dependent sin 2 NA
476 42.51 temperature 25 10 > th dose dependent rect. 18 12
484 42.53 temperature 20 720 > th dose independent sin 21 NA
504 42.56 temperature 25 10 > th dose independent rect. 17 7
513 42.56 temperature 25 90 > th dose independent rect. 16 15
533 42.57 temperature 30 720 < th dose independent rect. 9 3
542 42.58 temperature 15 10 > th dose dependent rect. 6 21
569 42.62 temperature 30 270 < th dose independent rect. 24 19
574 42.63 temperature 25 90 < th dose independent sin 12 NA
645 42.70 atmosphere 1005 30 > th dose dependent rect. 15 8
648 42.71 temperature 20 720 > th dose independent rect. 21 5
649 42.71 temperature 30 720 > th dose dependent sin 7 NA
690 42.74 temperature 25 720 > th dose dependent rect. 11 23
695 42.75 temperature 30 720 > th dose dependent rect. 8 5
804 42.79 temperature 30 720 < th dose independent rect. 24 13
831 42.80 temperature 20 270 > th dose independent rect. 4 22
832 42.80 temperature 30 720 < th dose independent rect. 8 23
862 42.82 temperature 30 270 < th dose independent rect. 1 16
877 42.83 temperature 10 720 > th dose dependent rect. 23 17
881 42.84 temperature 30 720 < th dose independent rect. 2 10
891 42.85 temperature 20 720 > th dose independent rect. 12 14
893 42.85 temperature 25 720 > th dose dependent no NA NA
897 42.85 temperature 25 720 > th dose dependent rect. 6 22
910 42.86 temperature 25 720 > th dose dependent rect. 3 23
917 42.87 temperature 30 270 < th dose independent rect. 10 23
918 42.87 temperature 30 720 < th dose independent rect. 12 23
926 42.87 temperature 25 720 > th dose dependent rect. 13 23
939 42.88 temperature 10 30 > th dose dependent rect. 23 23
941 42.89 temperature 30 720 < th dose independent rect. 11 1
944 42.89 atmosphere 1000 270 < th dose independent rect. 1 22
952 42.90 atmosphere 1005 14400 > th dose independent rect. 11 1
989 42.91 temperature 10 720 > th dose dependent rect. 21 19