BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0382100 Os04g0382100|AK108218
(346 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14170.1 | chr5:4568696-4570444 REVERSE LENGTH=535 506 e-144
AT3G01890.1 | chr3:310332-311772 FORWARD LENGTH=459 438 e-123
AT2G35605.1 | chr2:14946161-14947027 FORWARD LENGTH=110 58 9e-09
AT3G03590.1 | chr3:865341-866669 REVERSE LENGTH=144 54 1e-07
AT4G34290.1 | chr4:16410883-16412122 FORWARD LENGTH=145 49 3e-06
AT3G19080.1 | chr3:6596082-6598667 FORWARD LENGTH=463 49 4e-06
>AT5G14170.1 | chr5:4568696-4570444 REVERSE LENGTH=535
Length = 534
Score = 506 bits (1303), Expect = e-144, Method: Compositional matrix adjust.
Identities = 238/331 (71%), Positives = 280/331 (84%), Gaps = 1/331 (0%)
Query: 1 PPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLKIIGRVLEDGAELDPASVVPKHN 60
PP +Q+TLRIYVFN+FANQ TIP NA+PPTW+LKIIGR+LEDG + D V K N
Sbjct: 194 PPCIQKTLRIYVFNSFANQN-NTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKAN 252
Query: 61 PVYPKFSSFFKRVTIALDPSLYPENPLIIWENARSAAPQEGFEVKRKGDKEFSANIRLEM 120
P++PKFSSFFKRVT++LD LYPENPLIIWENARS APQEGFE+KRKG++EF+A+IRLEM
Sbjct: 253 PLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEM 312
Query: 121 NYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFG 180
NY PEKFKLS LM+VLG+EV+TR R+IAA+W Y+KA+KLQNP DPSFF CD L+KVFG
Sbjct: 313 NYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG 372
Query: 181 EDKLRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHASACYDVIVDVPFPLQKEMSAFL 240
E+KL+F M+SQKIS HLSPPPPI+LEHKIKLSGN SACYDV+VDVPFP+Q++++ L
Sbjct: 373 EEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLL 432
Query: 241 ANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLIAG 300
AN EK+K+IEACDE I A+I+KIHEHRRRRAFFLGFSQSPVEFINALI SQSKDLK++AG
Sbjct: 433 ANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAG 492
Query: 301 XXXXXXXXXXXXDFYNQPWVEDAVIRYLNRK 331
DF+NQPWVEDAVIRYLNR+
Sbjct: 493 EASRNAERERRSDFFNQPWVEDAVIRYLNRR 523
>AT3G01890.1 | chr3:310332-311772 FORWARD LENGTH=459
Length = 458
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/331 (64%), Positives = 251/331 (75%), Gaps = 10/331 (3%)
Query: 1 PPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLKIIGRVLEDGAELDPASVVPKHN 60
PP++Q+TLRIYVFNTF+NQ P +PPTW+L+I GRVL+ +V N
Sbjct: 134 PPSIQKTLRIYVFNTFSNQIP-------GPDPPTWTLRIFGRVLDPDHT---GGLVQNSN 183
Query: 61 PVYPKFSSFFKRVTIALDPSLYPENPLIIWENARSAAPQEGFEVKRKGDKEFSANIRLEM 120
P+YPKFSSFFK + I+LD SLYPEN LI W+ RS AP EGFE+KR G +EF+A I LEM
Sbjct: 184 PLYPKFSSFFKTLKISLDQSLYPENHLIEWKRDRSPAPLEGFEIKRIGCQEFAATILLEM 243
Query: 121 NYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFG 180
NY PEKFK S LM+VLG+EVDTR R+IAA+W Y+K +KLQNP DPSFF CD L VFG
Sbjct: 244 NYVPEKFKTSPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFG 303
Query: 181 EDKLRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHASACYDVIVDVPFPLQKEMSAFL 240
E+K++F MLS KISQHLSPPPPI L HKIKLSGN SACYDV+VD+P P+Q E+S L
Sbjct: 304 EEKMKFTMLSHKISQHLSPPPPIQLVHKIKLSGNNPAISACYDVLVDIPAPVQTELSNLL 363
Query: 241 ANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLIAG 300
AN EK+K+IEACDE I +I+KIHEHRRRRAFFLGFSQSPVEF NAL+ SQ+KDLKL+AG
Sbjct: 364 ANPEKNKEIEACDEAICGAIRKIHEHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAG 423
Query: 301 XXXXXXXXXXXXDFYNQPWVEDAVIRYLNRK 331
+F+NQPWVEDA IRYLNRK
Sbjct: 424 EASRNAEKEGRSEFFNQPWVEDAAIRYLNRK 454
>AT2G35605.1 | chr2:14946161-14947027 FORWARD LENGTH=110
Length = 109
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 129 LSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVF-GEDKLRFA 187
+S+PL +G +R+ + +W+YIK LQNP + +CD QLK +F G+D + F
Sbjct: 36 VSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFL 95
Query: 188 MLSQKISQHL 197
+S+ +SQH
Sbjct: 96 EISKLLSQHF 105
>AT3G03590.1 | chr3:865341-866669 REVERSE LENGTH=144
Length = 143
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 133 LMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVF-GEDKLRFAMLSQ 191
L + LG +R+ I +W YIK+ LQNP D CD LK +F G+DK+ F +S+
Sbjct: 74 LAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISK 133
Query: 192 KISQHL 197
+S H
Sbjct: 134 LLSPHF 139
>AT4G34290.1 | chr4:16410883-16412122 FORWARD LENGTH=145
Length = 144
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 129 LSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVF-GEDKLRFA 187
+SQ + +V+GV R++ + +W YIK LQ+P + +CD +LKK+F G++++ F
Sbjct: 74 VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133
Query: 188 MLSQKISQH 196
+++ I H
Sbjct: 134 EIAKLIGPH 142
>AT3G19080.1 | chr3:6596082-6598667 FORWARD LENGTH=463
Length = 462
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 129 LSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFGEDKLRFAM 188
LS L GV R+ V+ LW+YIK LQ+P D +CD + +F + +
Sbjct: 270 LSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQ 329
Query: 189 LSQKISQHL-----------SPPPPINLEHKIKLSG-----NGAHASACYDVIVDVPFPL 232
+++++++H+ S P N + K++ G N +V+ P PL
Sbjct: 330 MNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESDGDSEEPNEKDKKQKKEVL--APLPL 387
Query: 233 QKEMSAFLANTE 244
+ FL + E
Sbjct: 388 SDALVKFLGDGE 399
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,458,211
Number of extensions: 324157
Number of successful extensions: 927
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 247
Effective length of database: 8,392,385
Effective search space: 2072919095
Effective search space used: 2072919095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)